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Items: 16

1.
Single-nucleus RNA sequencing of developing superior colliculus identifies neuronal diversity and candidate mediators of circuit assembly
James S. Choi, Ana C. Ayupe, Felipe Beckedorff, Paola Catanuto, Robyn McCartan, Konstantin Levay, Kevin K. Park
Cell Rep. Author manuscript; available in PMC 2023 Oct 23.
Published in final edited form as: Cell Rep. 2023 Sep 26; 42(9): 113037. Published online 2023 Aug 24. doi: 10.1016/j.celrep.2023.113037
PMCID:
PMC10592058
AbstractArticlePDF–4.5M
2.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
3.
Presynaptic Dystroglycan–Pikachurin Complex Regulates the Proper Synaptic Connection between Retinal Photoreceptor and Bipolar Cells
Yoshihiro Omori, Fumiyuki Araki, Taro Chaya, Naoko Kajimura, Shoichi Irie, Koji Terada, Yuki Muranishi, Toshinori Tsujii, Shinji Ueno, Toshiyuki Koyasu, Yasuhiro Tamaki, Mineo Kondo, Shiro Amano, Takahisa Furukawa
J Neurosci. 2012 May 2; 32(18): 6126–6137. doi: 10.1523/JNEUROSCI.0322-12.2012
PMCID:
PMC6622127
AbstractArticlePDF–5.5M
4.
Transsynaptic Binding of Orphan Receptor GPR179 to Dystroglycan-Pikachurin Complex Is Essential for the Synaptic Organization of Photoreceptors
Cesare Orlandi, Yoshihiro Omori, Yuchen Wang, Yan Cao, Akiko Ueno, Michel J. Roux, Giuseppe Condomitti, Joris de Wit, Motoi Kanagawa, Takahisa Furukawa, Kirill A. Martemyanov
Cell Rep. Author manuscript; available in PMC 2018 Oct 26.
Published in final edited form as: Cell Rep. 2018 Oct 2; 25(1): 130–145.e5. doi: 10.1016/j.celrep.2018.08.068
PMCID:
PMC6203450
AbstractArticlePDF–2.9M
5.
Pikachurin Protein Required for Increase of Cone Electroretinogram B-Wave during Light Adaptation
Masatoshi Nagaya, Shinji Ueno, Taro Kominami, Ayami Nakanishi, Toshiyuki Koyasu, Mineo Kondo, Takahisa Furukawa, Hiroko Terasaki
PLoS One. 2015; 10(6): e0128921. Published online 2015 Jun 19. doi: 10.1371/journal.pone.0128921
PMCID:
PMC4475018
AbstractArticlePDF–1.3M
6.
Role of the Mouse Retinal Photoreceptor Ribbon Synapse in Visual Motion Processing for Optokinetic Responses
Yuko Sugita, Fumiyuki Araki, Taro Chaya, Kenji Kawano, Takahisa Furukawa, Kenichiro Miura
PLoS One. 2015; 10(5): e0124132. Published online 2015 May 8. doi: 10.1371/journal.pone.0124132
PMCID:
PMC4425508
AbstractArticlePDF–1.2M
7.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
8.
Cell Specific Post-Translational Processing of Pikachurin, A Protein Involved in Retinal Synaptogenesis
Jianzhong Han, Ellen Townes-Anderson
PLoS One. 2012; 7(12): e50552. Published online 2012 Dec 4. doi: 10.1371/journal.pone.0050552
PMCID:
PMC3514312
AbstractArticlePDF–495K
9.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
10.
Pikachurin interaction with dystroglycan is diminished by defective O-mannosyl glycosylation in congenital muscular dystrophy models and rescued by LARGE overexpression
Huaiyu Hu, Jing Li, Zhen Zhang, Miao Yu
Neurosci Lett. Author manuscript; available in PMC 2012 Feb 1.
Published in final edited form as: Neurosci Lett. 2011 Feb 1; 489(1): 10–15. Published online 2010 Dec 1. doi: 10.1016/j.neulet.2010.11.056
PMCID:
PMC3018538
AbstractArticlePDF–360K
11.
Post-translational Maturation of Dystroglycan Is Necessary for Pikachurin Binding and Ribbon Synaptic Localization
Motoi Kanagawa, Yoshihiro Omori, Shigeru Sato, Kazuhiro Kobayashi, Yuko Miyagoe-Suzuki, Shin'ichi Takeda, Tamao Endo, Takahisa Furukawa, Tatsushi Toda
J Biol Chem. 2010 Oct 8; 285(41): 31208–31216. Published online 2010 Aug 3. doi: 10.1074/jbc.M110.116343
PMCID:
PMC2951195
AbstractArticlePDF–1.4M
12.
Transcriptome-based systematic identification of extracellular matrix proteins
Ri-ichiroh Manabe, Ko Tsutsui, Tomiko Yamada, Mina Kimura, Itsuko Nakano, Chisei Shimono, Noriko Sanzen, Yutaka Furutani, Tomohiko Fukuda, Yasuko Oguri, Keiko Shimamoto, Daiji Kiyozumi, Yuya Sato, Yoshikazu Sado, Haruki Senoo, Shohei Yamashina, Shiro Fukuda, Jun Kawai, Nobuo Sugiura, Koji Kimata, Yoshihide Hayashizaki, Kiyotoshi Sekiguchi
Proc Natl Acad Sci U S A. 2008 Sep 2; 105(35): 12849–12854. Published online 2008 Aug 29. doi: 10.1073/pnas.0803640105
PMCID:
PMC2529034
AbstractArticlePDF–1.1M
13.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
14.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
15.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
16.
Database resources of the National Center for Biotechnology Information
David L. Wheeler, Deanna M. Church, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Tatiana A. Tatusova, Lukas Wagner, Barbara A. Rapp
Nucleic Acids Res. 2001 Jan 1; 29(1): 11–16. doi: 10.1093/nar/29.1.11
PMCID:
PMC29800
AbstractArticlePDF–101K

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