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Items: 16

1.
DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples
Fenglong Jiao, Clinton Yu, Andrew Wheat, Lijun Chen, Tung-Shing Mamie Lih, Hui Zhang, Lan Huang
J Proteome Res. Author manuscript; available in PMC 2024 Aug 3.
Published in final edited form as: J Proteome Res. 2024 Aug 2; 23(8): 3269–3279. Published online 2024 Feb 9. doi: 10.1021/acs.jproteome.3c00832
PMCID:
PMC11296914
AbstractArticlePDF–1.7M
2.
Proteome‐scale mapping of binding sites in the unstructured regions of the human proteome
Caroline Benz, Muhammad Ali, Izabella Krystkowiak, Leandro Simonetti, Ahmed Sayadi, Filip Mihalic, Johanna Kliche, Eva Andersson, Per Jemth, Norman E Davey, Ylva Ivarsson
Mol Syst Biol. 2022 Jan; 18(1): e10584. Published online 2022 Jan 19. doi: 10.15252/msb.202110584
PMCID:
PMC8769072
AbstractArticlePDF–2.9M
3.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
4.
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale
Science. Author manuscript; available in PMC 2021 Mar 30.
Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239
PMCID:
PMC8009048
AbstractArticlePDF–2.6M
5.
CUX2, BRAP and ALDH2 are associated with metabolic traits in people with excessive alcohol consumption
I-Chun Chen, Po-Hsiu Kuo, Albert C. Yang, Shih-Jen Tsai, Tung-Hsia Liu, Hung-Jen Liu, Tsuo-Hung Lan, Hong-Ming Chen, Huang-Nan Huang, Ren-Hua Chung, Yu-Li Liu
Sci Rep. 2020; 10: 18118. Published online 2020 Oct 22. doi: 10.1038/s41598-020-75199-y
PMCID:
PMC7583246
AbstractArticlePDF–1.7M
6.
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck
Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924
PMCID:
PMC6166682
AbstractArticlePDF–3.8M
7.
A recurrent de novo CUX2 missense variant associated with intellectual disability, seizures, and autism spectrum disorder
Maria Barington, Lotte Risom, Jakob Ek, Peter Uldall, Elsebet Ostergaard
Eur J Hum Genet. 2018 Sep; 26(9): 1388–1391. Published online 2018 May 24. doi: 10.1038/s41431-018-0184-5
PMCID:
PMC6117349
AbstractArticlePDF–297K
8.
The epilepsy phenotypic spectrum associated with a recurrent CUX2 variant
Nicolas Chatron, Rikke S. Møller, Neena L. Champaigne, Amy L. Schneider MGenCouns, Alma Kuechler, Audrey Labalme, Thomas Simonet, Lauren Baggett, Claire Bardel, Erik-Jan Kamsteeg, Rolph Pfundt, Corrado Romano, Johan Aronsson, Antonino Alberti, Mirella Vinci, Maria J. Miranda, Amy Lacroix, Dragan Marjanovic, Vincent des Portes, Patrick Edery, Dagmar Wieczorek, Elena Gardella, Ingrid E. Scheffer, Heather Mefford, Damien Sanlaville, Gemma L. Carvill, Gaetan Lesca
Ann Neurol. Author manuscript; available in PMC 2019 May 1.
Published in final edited form as: Ann Neurol. 2018 May; 83(5): 926–934. Published online 2018 Apr 30. doi: 10.1002/ana.25222
PMCID:
PMC6021218
AbstractArticlePDF–1.5M
9.
Genomic Variants in NEURL, GJA1 and CUX2 Significantly Increase Genetic Susceptibility to Atrial Fibrillation
Pengxia Wang, Weixi Qin, Pengyun Wang, Yufeng Huang, Ying Liu, Rongfeng Zhang, Sisi Li, Qin Yang, Xiaojing Wang, Feifei Chen, Jingqiu Liu, Bo Yang, Xiang Cheng, Yuhua Liao, Yanxia Wu, Tie Ke, Xin Tu, Xiang Ren, Yanzong Yang, Yunlong Xia, Xiaoping Luo, Mugen Liu, He Li, Jingyu Liu, Yi Xiao, Qiuyun Chen, Chengqi Xu, Qing K. Wang
Sci Rep. 2018; 8: 3297. Published online 2018 Feb 19. doi: 10.1038/s41598-018-21611-7
PMCID:
PMC5818533
AbstractArticlePDF–1.2M
10.
CUX2 Protein Functions as an Accessory Factor in the Repair of Oxidative DNA Damage
Ranjana Pal, Zubaidah M. Ramdzan, Simran Kaur, Philippe M. Duquette, Richard Marcotte, Lam Leduy, Sayeh Davoudi, Nathalie Lamarche-Vane, Angelo Iulianella, Alain Nepveu
J Biol Chem. 2015 Sep 11; 290(37): 22520–22531. Published online 2015 Jul 28. doi: 10.1074/jbc.M115.651042
PMCID:
PMC4566227
AbstractArticlePDF–627K
11.
1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data
Jie Huang, David Ellinghaus, Andre Franke, Bryan Howie, Yun Li
Eur J Hum Genet. 2012 Jul; 20(7): 801–805. Published online 2012 Feb 1. doi: 10.1038/ejhg.2012.3
PMCID:
PMC3376268
AbstractArticlePDF–326K
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
High-density SNP association study and copy number variation analysis of the AUTS1 and AUTS5 loci implicate the IMMP2L–DOCK4 gene region in autism susceptibility
E Maestrini, A T Pagnamenta, J A Lamb, E Bacchelli, N H Sykes, I Sousa, C Toma, G Barnby, H Butler, L Winchester, T S Scerri, F Minopoli, J Reichert, G Cai, J D Buxbaum, O Korvatska, G D Schellenberg, G Dawson, A de Bildt, R B Minderaa, E J Mulder, A P Morris, A J Bailey, A P Monaco, IMGSAC
Mol Psychiatry. 2010 Sep; 15(9): 954–968. Published online 2009 Apr 28. doi: 10.1038/mp.2009.34
PMCID:
PMC2934739
AbstractArticlePDF–376K
14.
Maternal Genes and Facial Clefts in Offspring: A Comprehensive Search for Genetic Associations in Two Population-Based Cleft Studies from Scandinavia
Astanand Jugessur, Min Shi, Håkon Kristian Gjessing, Rolv Terje Lie, Allen James Wilcox, Clarice Ring Weinberg, Kaare Christensen, Abee Lowman Boyles, Sandra Daack-Hirsch, Truc Trung Nguyen, Lene Christiansen, Andrew Carl Lidral, Jeffrey Clark Murray
PLoS One. 2010; 5(7): e11493. Published online 2010 Jul 9. doi: 10.1371/journal.pone.0011493
PMCID:
PMC2901336
AbstractArticlePDF–778K
15.
Large-Scale Proteomics and Phosphoproteomics of Urinary Exosomes
Patricia A. Gonzales, Trairak Pisitkun, Jason D. Hoffert, Dmitry Tchapyjnikov, Robert A. Star, Robert Kleta, Nam Sun Wang, Mark A. Knepper
J Am Soc Nephrol. 2009 Feb; 20(2): 363–379. doi: 10.1681/ASN.2008040406
PMCID:
PMC2637050
AbstractArticle
16.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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