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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 108687272.

Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates

Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus

Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.

Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2

PMCID:: PMC10868727

Abstract Article PDF–7.0M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 106812594.

eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae

Laura Meyer, Baptiste Courtin, Maïté Gomard, Abdelkader Namane, Emmanuelle Permal, Gwenael Badis, Alain Jacquier, Micheline Fromont-Racine

PLoS One. 2023; 18(11): e0293228. Published online 2023 Nov 27. doi: 10.1371/journal.pone.0293228

PMCID:: PMC10681259

Abstract Article PDF–2.5M

Select item 102350865.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 102333686.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 93968257.

Eps15/Pan1p is a master regulator of the late stages of the endocytic pathway

Mariko Enshoji, Yoshiko Miyano, Nao Yoshida, Makoto Nagano, Minami Watanabe, Mayumi Kunihiro, Daria E. Siekhaus, Junko Y. Toshima, Jiro Toshima

J Cell Biol. 2022 Oct 3; 221(10): e202112138. Published online 2022 Aug 19. doi: 10.1083/jcb.202112138

PMCID:: PMC9396825

Abstract Article PDF–7.4M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 88331629.

ER-phagy requires the assembly of actin at sites of contact between the cortical ER and endocytic pits

Dongmei Liu, Muriel Mari, Xia Li, Fulvio Reggiori, Susan Ferro-Novick, Peter Novick

Proc Natl Acad Sci U S A. 2022 Feb 8; 119(6): e2117554119. Published online 2022 Jan 31. doi: 10.1073/pnas.2117554119

PMCID:: PMC8833162

Abstract Article PDF–2.4M

Select item 862826310.

Cooperative regulation of endocytic vesicle transport by yeast Eps15-like protein Pan1p and epsins

Nao Yoshida, Ippo Ogura, Makoto Nagano, Tadashi Ando, Junko Y. Toshima, Jiro Toshima

J Biol Chem. 2021 Nov; 297(5): 101254. Published online 2021 Sep 27. doi: 10.1016/j.jbc.2021.101254

PMCID:: PMC8628263

Abstract Article PDF–3.0M

Select item 828506111.

Phosphorylation of Pal2 by the protein kinases Kin1 and Kin2 modulates HAC1 mRNA splicing in the unfolded protein response in yeast

Chandrima Ghosh, Jagadeesh Kumar Uppala, Leena Sathe, Charlotte I. Hammond, Ashish Anshu, P Raj Pokkuluri, Benjamin E. Turk, Madhusudan Dey

Sci Signal. Author manuscript; available in PMC 2021 Nov 25.

Published in final edited form as: Sci Signal. 2021 May 25; 14(684): eaaz4401. Published online 2021 May 25. doi: 10.1126/scisignal.aaz4401

PMCID:: PMC8285061

Abstract Article PDF–2.2M

Select item 772147512.

A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits

Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister

Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030

PMCID:: PMC7721475

Abstract Article

Select item 771875113.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 757835514.

Cargo-mediated recruitment of the endocytic adaptor protein Sla1 in S. cerevisiae

Thomas O. Tolsma, Hallie P. Febvre, Deanna M. Olson, Santiago M. Di Pietro

J Cell Sci. 2020 Oct 1; 133(19): jcs247684. Published online 2020 Oct 12. doi: 10.1242/jcs.247684

PMCID:: PMC7578355

Abstract Article

Select item 754306815.

Conserved Ark1-related kinases function in a TORC2 signaling network

Maria Alcaide-Gavilán, Rafael Lucena, Selene Banuelos, Douglas R. Kellogg

Mol Biol Cell. 2020 Aug 15; 31(18): 2057–2069. doi: 10.1091/mbc.E19-12-0685

PMCID:: PMC7543068

Abstract Article PDF–2.0M

Select item 721840916.

The protein architecture of the endocytic coat analyzed by FRET microscopy

Michal Skruzny, Emma Pohl, Sandina Gnoth, Gabriele Malengo, Victor Sourjik

Mol Syst Biol. 2020 May; 16(5): e9009. Published online 2020 May 13. doi: 10.15252/msb.20199009

PMCID:: PMC7218409

Abstract Article PDF–1.1M

Select item 667940717.

Analysis of novel hyperosmotic shock response suggests ‘beads in liquid’ cytosol structure

Alexander I. Alexandrov, Erika V. Grosfeld, Alexander A. Dergalev, Vitaly V. Kushnirov, Roman N. Chuprov-Netochin, Pyotr A. Tyurin-Kuzmin, Igor I. Kireev, Michael D. Ter-Avanesyan, Sergey V. Leonov, Michael O. Agaphonov

Biol Open. 2019 Jul 15; 8(7): bio044529. Published online 2019 Jul 8. doi: 10.1242/bio.044529