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Select item 114465481.

The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

Moran Kelbert, Antonio Jordán-Pla, Lola de Miguel-Jiménez, José García-Martínez, Michael Selitrennik, Adi Guterman, Noa Henig, Sander Granneman, José E Pérez-Ortín, Sebastián Chávez, Mordechai Choder

eLife. 2024; 12: RP90766. Published online 2024 Oct 2. doi: 10.7554/eLife.90766

PMCID:: PMC11446548

Abstract Article PDF–7.1M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166424.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 92023606.

Genetic suppressors of Δgrx3 Δgrx4, lacking redundant multidomain monothiol yeast glutaredoxins, rescue growth and iron homeostasis

Guichun Li, Ankanahalli N. Nanjaraj Urs, Andrew Dancis, Yan Zhang

Biosci Rep. 2022 Jun 30; 42(6): BSR20212665. Published online 2022 Jun 9. doi: 10.1042/BSR20212665

PMCID:: PMC9202360

Abstract Article PDF–2.0M

Select item 78794827.

Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes

Yeonji Chang, Gyubum Lim, Won-Ki Huh

J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060

PMCID:: PMC7879482

Abstract Article PDF–5.9M

Select item 76724348.

Mechanisms coordinating ribosomal protein gene transcription in response to stress

Sevil Zencir, Daniel Dilg, Maria Paula Rueda, David Shore, Benjamin Albert

Nucleic Acids Res. 2020 Nov 18; 48(20): 11408–11420. Published online 2020 Oct 21. doi: 10.1093/nar/gkaa852

PMCID:: PMC7672434

Abstract Article PDF–3.6M

Select item 67651369.

The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4

Victoria Begley, Daniel Corzo, Antonio Jordán-Pla, Abel Cuevas-Bermúdez, Lola de Miguel-Jiménez, David Pérez-Aguado, Mercedes Machuca-Ostos, Francisco Navarro, María José Chávez, José E Pérez-Ortín, Sebastián Chávez

Nucleic Acids Res. 2019 Oct 10; 47(18): 9524–9541. Published online 2019 Aug 8. doi: 10.1093/nar/gkz660

PMCID:: PMC6765136

Abstract Article PDF–4.3M

Select item 670745210.

Multiple Negative Regulators Restrict Recruitment of the SWI/SNF Chromatin Remodeler to the HO Promoter in Saccharomyces cerevisiae

Emily J. Parnell, David J. Stillman

Genetics. 2019 Aug; 212(4): 1181–1204. Published online 2019 Jun 5. doi: 10.1534/genetics.119.302359

PMCID:: PMC6707452

Abstract Article PDF–2.3M

Select item 666992211.

Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism

Oliver Schmidt, Yannick Weyer, Verena Baumann, Michael A Widerin, Sebastian Eising, Mihaela Angelova, Alexander Schleiffer, Leopold Kremser, Herbert Lindner, Matthias Peter, Florian Fröhlich, David Teis

EMBO J. 2019 Aug 1; 38(15): e101433. Published online 2019 May 27. doi: 10.15252/embj.2018101433

PMCID:: PMC6669922

Abstract Article PDF–2.8M

Select item 661571012.

The nucleotide sequence of Saccharomyces cerevisiae chromosome XII

M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel

Nature. Author manuscript; available in PMC 2019 Jul 9.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.

PMCID:: PMC6615710

Abstract Article PDF–424K

Select item 658956613.

Selective defects in gene expression control genome instability in yeast splicing mutants

Annie S. Tam, Tianna S. Sihota, Karissa L. Milbury, Anni Zhang, Veena Mathew, Peter C. Stirling

Mol Biol Cell. 2019 Jan 15; 30(2): 191–200. doi: 10.1091/mbc.E18-07-0439

PMCID:: PMC6589566

Abstract Article PDF–5.1M

Select item 656065214.

Physical Forces Modulate Oxidative Status and Stress Defense Meditated Metabolic Adaptation of Yeast Colonies: Spaceflight and Microgravity Simulations

Timothy G. Hammond, Patricia L. Allen, Margaret A. Gunter, Jennifer Chiang, Guri Giaever, Corey Nislow, Holly H. Birdsall

Microgravity Sci Technol. 2018; 30(3): 195–208. Published online 2017 Dec 29. doi: 10.1007/s12217-017-9588-z

PMCID:: PMC6560652

Abstract Article PDF–994K

Select item 641100415.

Sfp1 regulates transcriptional networks driving cell growth and division through multiple promoter-binding modes

Benjamin Albert, Susanna Tomassetti, Yvonne Gloor, Daniel Dilg, Stefano Mattarocci, Slawomir Kubik, Lukas Hafner, David Shore

Genes Dev. 2019 Mar 1; 33(5-6): 288–293. doi: 10.1101/gad.322040.118

PMCID:: PMC6411004

Abstract Article PDF–1.2M

Select item 633790816.

Nuclear envelope expansion in budding yeast is independent of cell growth and does not determine nuclear volume

Alison D. Walters, Kwabena Amoateng, Renjie Wang, Jian-Hua Chen, Gerry McDermott, Carolyn A. Larabell, Olivier Gadal, Orna Cohen-Fix

Mol Biol Cell. 2019 Jan 1; 30(1): 131–145. doi: 10.1091/mbc.E18-04-0204

PMCID:: PMC6337908

Abstract Article PDF–8.4M

Select item 629136617.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 600332318.

Distributed and dynamic intracellular organization of extracellular information

Alejandro A. Granados, Julian M. J. Pietsch, Sarah A. Cepeda-Humerez, Iseabail L. Farquhar, Gašper Tkačik, Peter S. Swain

Proc Natl Acad Sci U S A. 2018 Jun 5; 115(23): 6088–6093. Published online 2018 May 21. doi: 10.1073/pnas.1716659115

PMCID:: PMC6003323

Abstract Article PDF–1.3M

Select item 574627619.

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

Audrey P. Gasch, Feiqiao Brian Yu, James Hose, Leah E. Escalante, Mike Place, Rhonda Bacher, Jad Kanbar, Doina Ciobanu, Laura Sandor, Igor V. Grigoriev, Christina Kendziorski, Stephen R. Quake, Megan N. McClean

PLoS Biol. 2017 Dec; 15(12): e2004050. Published online 2017 Dec 14. doi: 10.1371/journal.pbio.2004050

PMCID:: PMC5746276

Abstract Article PDF–6.2M

Select item 571674120.

A systematic assessment of chemical, genetic, and epigenetic factors influencing the activity of anticancer drug KP1019 (FFC14A)

Upendarrao Golla, Swati Swagatika, Sakshi Chauhan, Raghuvir Singh Tomar

Oncotarget. 2017 Nov 17; 8(58): 98426–98454. Published online 2017 Sep 30. doi: 10.18632/oncotarget.21416

PMCID:: PMC5716741

Abstract Article PDF–11M

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