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Items: 1 to 20 of 129

1.
Alternative translation initiation by ribosomal leaky scanning produces multiple isoforms of the Pif1 helicase
Tomas Lama-Diaz, Miguel G Blanco
Nucleic Acids Res. 2024 Jul 8; 52(12): 6928–6944. Published online 2024 May 23. doi: 10.1093/nar/gkae400
PMCID:
PMC11229318
AbstractArticlePDF–2.6M
2.
Two residues in the DNA binding site of Pif1 helicase are essential for nuclear functions but dispensable for mitochondrial respiratory growth
Jun Gao, David R Proffitt, John C Marecki, Reine U Protacio, Wayne P Wahls, Alicia K Byrd, Kevin D Raney
Nucleic Acids Res. 2024 Jun 24; 52(11): 6543–6557. Published online 2024 May 16. doi: 10.1093/nar/gkae403
PMCID:
PMC11194084
AbstractArticlePDF–2.2M
3.
Dbf4-dependent kinase promotes cell cycle controlled resection of DNA double-strand breaks and repair by homologous recombination
Lorenzo Galanti, Martina Peritore, Robert Gnügge, Elda Cannavo, Johannes Heipke, Maria Dilia Palumbieri, Barbara Steigenberger, Lorraine S. Symington, Petr Cejka, Boris Pfander
Nat Commun. 2024; 15: 2890. Published online 2024 Apr 3. doi: 10.1038/s41467-024-46951-z
PMCID:
PMC10991553
AbstractArticlePDF–4.7M
4.
Loss of Dna2 fidelity results in decreased Exo1-mediated resection at DNA double-strand breaks
Aditya Mojumdar, Courtney Granger, Martine Lunke, Jennifer A. Cobb
J Biol Chem. 2024 Mar; 300(3): 105708. Published online 2024 Feb 2. doi: 10.1016/j.jbc.2024.105708
PMCID:
PMC10909748
AbstractArticlePDF–2.9M
5.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
6.
Checkpoint phosphorylation sites on budding yeast Rif1 protect nascent DNA from degradation by Sgs1-Dna2
Vamsi Krishna Gali, Chandre Monerawela, Yassine Laksir, Shin-ichiro Hiraga, Anne D. Donaldson
PLoS Genet. 2023 Nov; 19(11): e1011044. Published online 2023 Nov 13. doi: 10.1371/journal.pgen.1011044
PMCID:
PMC10681312
AbstractArticlePDF–3.2M
7.
Dna2 removes toxic ssDNA-RPA filaments generated from meiotic recombination-associated DNA synthesis
Binyuan Zhai, Shuxian Zhang, Bo Li, Jiaming Zhang, Xuan Yang, Yingjin Tan, Ying Wang, Taicong Tan, Xiao Yang, Beiyi Chen, Zhongyu Tian, Yanding Cao, Qilai Huang, Jinmin Gao, Shunxin Wang, Liangran Zhang
Nucleic Acids Res. 2023 Aug 25; 51(15): 7914–7935. Published online 2023 Jun 23. doi: 10.1093/nar/gkad537
PMCID:
PMC10450173
AbstractArticlePDF–3.1M
8.
Identification of the nuclear localization signal in the Saccharomyces cerevisiae Pif1 DNA helicase
Rosemary S. Lee, Carly L. Geronimo, Liping Liu, Jerzy M. Twarowski, Anna Malkova, Virginia A. Zakian
PLoS Genet. 2023 Jul; 19(7): e1010853. Published online 2023 Jul 24. doi: 10.1371/journal.pgen.1010853
PMCID:
PMC10399864
AbstractArticlePDF–3.2M
9.
Cdc14 phosphatase counteracts Cdk-dependent Dna2 phosphorylation to inhibit resection during recombinational DNA repair
Adrián Campos, Facundo Ramos, Lydia Iglesias, Celia Delgado, Eva Merino, Antonio Esperilla-Muñoz, Jaime Correa-Bordes, Andrés Clemente-Blanco
Nat Commun. 2023; 14: 2738. Published online 2023 May 12. doi: 10.1038/s41467-023-38417-5
PMCID:
PMC10182099
AbstractArticlePDF–8.9M
10.
A synthetic biology approach reveals diverse and dynamic CDK response profiles via multisite phosphorylation of NLS-NES modules
Ilona Faustova, Mihkel Örd, Viacheslav Kiselev, Dmytro Fedorenko, Irina Borovko, Dags Macs, Kaur Pääbo, Marko Lõoke, Mart Loog
Sci Adv. 2022 Aug; 8(33): eabp8992. Published online 2022 Aug 17. doi: 10.1126/sciadv.abp8992
PMCID:
PMC9385143
AbstractArticlePDF–1.4M
11.
Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes
Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown, Jennifer A Surtees
Genetics. 2022 Aug; 221(4): iyac092. Published online 2022 Jun 10. doi: 10.1093/genetics/iyac092
PMCID:
PMC9339293
AbstractArticlePDF–7.9M
12.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
13.
Nej1 interacts with Sae2 at DNA double-stranded breaks to inhibit DNA resection
Aditya Mojumdar, Nancy Adam, Jennifer A. Cobb
J Biol Chem. 2022 Jun; 298(6): 101937. Published online 2022 Apr 13. doi: 10.1016/j.jbc.2022.101937
PMCID:
PMC9117546
AbstractArticlePDF–2.7M
14.
The chromatin remodeler Chd1 supports MRX and Exo1 functions in resection of DNA double-strand breaks
Marco Gnugnoli, Erika Casari, Maria Pia Longhese
PLoS Genet. 2021 Sep; 17(9): e1009807. Published online 2021 Sep 14. doi: 10.1371/journal.pgen.1009807
PMCID:
PMC8462745
AbstractArticlePDF–3.2M
15.
The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription
David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz
J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051
PMCID:
PMC8353526
AbstractArticle
16.
Phosphoproteomics reveals a distinctive Mec1/ATR signaling response upon DNA end hyper‐resection
Ethan J Sanford, William J Comstock, Vitor M Faça, Stephanie C Vega, Robert Gnügge, Lorraine S Symington, Marcus B Smolka
EMBO J. 2021 May 17; 40(10): e104566. Published online 2021 Mar 25. doi: 10.15252/embj.2020104566
PMCID:
PMC8126923
AbstractArticlePDF–2.3M
17.
The secondary‐structured DNA‐binding activity of Dna2 endonuclease/helicase is critical to cell growth under replication stress
Soyeong Park, Nargis Karatayeva, Annie Albert Demin, Palinda Ruvan Munashingha, Yeon‐Soo Seo
FEBS J. 2021 Feb; 288(4): 1224–1242. Published online 2020 Jul 19. doi: 10.1111/febs.15475
PMCID:
PMC7984218
AbstractArticlePDF–5.2M
18.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
19.
Disease-associated DNA2 nuclease–helicase protects cells from lethal chromosome under-replication
Benoît Falquet, Gizem Ölmezer, Franz Enkner, Dominique Klein, Kiran Challa, Rowin Appanah, Susan M Gasser, Ulrich Rass
Nucleic Acids Res. 2020 Jul 27; 48(13): 7265–7278. Published online 2020 Jun 16. doi: 10.1093/nar/gkaa524
PMCID:
PMC7367196
AbstractArticlePDF–5.3M
20.
NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets
Lijuan Zhu, Ju Zhang, Yi Zhang, Jidong Lang, Ju Xiang, Xiaogang Bai, Na Yan, Geng Tian, Huajun Zhang, Jialiang Yang
Front Bioeng Biotechnol. 2020; 8: 547. Published online 2020 Jun 19. doi: 10.3389/fbioe.2020.00547
PMCID:
PMC7318716
AbstractArticlePDF–2.4M

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