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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 108512282.

The yeast AMP-activated protein kinase Snf1 phosphorylates the inositol polyphosphate kinase Kcs1

Sham Sunder, Joshua S. Bauman, Stuart J. Decker, Alexandra R. Lifton, Anuj Kumar

J Biol Chem. 2024 Feb; 300(2): 105657. Published online 2024 Jan 13. doi: 10.1016/j.jbc.2024.105657

PMCID:: PMC10851228

Abstract Article PDF–3.1M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 106812594.

eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae

Laura Meyer, Baptiste Courtin, Maïté Gomard, Abdelkader Namane, Emmanuelle Permal, Gwenael Badis, Alain Jacquier, Micheline Fromont-Racine

PLoS One. 2023; 18(11): e0293228. Published online 2023 Nov 27. doi: 10.1371/journal.pone.0293228

PMCID:: PMC10681259

Abstract Article PDF–2.5M

Select item 101630885.

Functional characterization and comparative analysis of gene repression-mediating domains interacting with yeast pleiotropic corepressors Sin3, Cyc8 and Tup1

Julia Lettow, Felix Kliewe, Rasha Aref, Hans-Joachim Schüller

Curr Genet. 2023; 69(2-3): 127–139. Published online 2023 Mar 1. doi: 10.1007/s00294-023-01262-6

PMCID:: PMC10163088

Abstract Article PDF–1.2M

Select item 96309866.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 88449768.

Metabolic remodeling maintains a reducing environment for rapid activation of the yeast DNA replication checkpoint

Lili Li, Jie Wang, Zijia Yang, Yiling Zhao, Hui Jiang, Luguang Jiang, Wenya Hou, Risheng Ye, Qun He, Martin Kupiec, Brian Luke, Qinhong Cao, Zhi Qi, Zhen Li, Huiqiang Lou

EMBO J. 2022 Feb 15; 41(4): e108290. Published online 2022 Jan 14. doi: 10.15252/embj.2021108290

PMCID:: PMC8844976

Abstract Article PDF–2.8M

Select item 88014119.

Transcriptional repressor Gal80 recruits corepressor complex Cyc8–Tup1 to structural genes of the Saccharomyces cerevisiae GAL regulon

Julia Lettow, Rasha Aref, Hans-Joachim Schüller

Curr Genet. 2022; 68(1): 115–124. Published online 2021 Oct 7. doi: 10.1007/s00294-021-01215-x

PMCID:: PMC8801411

Abstract Article PDF–1.2M

Select item 837338010.

Variation in the modality of a yeast signaling pathway is mediated by a single regulator

Julius Palme, Jue Wang, Michael Springer

eLife. 2021; 10: e69974. Published online 2021 Aug 9. doi: 10.7554/eLife.69974

PMCID:: PMC8373380

Abstract Article PDF–2.9M

Select item 834346311.

Correlative single-molecule fluorescence barcoding of gene regulation in Saccharomyces cerevisiae

Sviatlana Shashkova, Thomas Nyström, Mark C. Leake, Adam J.M. Wollman

Methods. 2021 Sep; 193: 62–67. doi: 10.1016/j.ymeth.2020.10.009

PMCID:: PMC8343463

Abstract Article

Select item 817353912.

Decoupling transcription factor expression and activity enables dimmer switch gene regulation

C. Ricci-Tam, I. Ben-Zion, J. Wang, J. Palme, A. Li, Y. Savir, M. Springer

Science. Author manuscript; available in PMC 2021 Jun 3.

Published in final edited form as: Science. 2021 Apr 16; 372(6539): 292–295. doi: 10.1126/science.aba7582

PMCID:: PMC8173539

Abstract Article PDF–914K

Select item 802500413.

OXPHOS deficiency activates global adaptation pathways to maintain mitochondrial membrane potential

Siqi Liu, Shanshan Liu, Baiyu He, Lanlan Li, Lin Li, Jiawen Wang, Tao Cai, She Chen, Hui Jiang

EMBO Rep. 2021 Apr 7; 22(4): e51606. Published online 2021 Mar 3. doi: 10.15252/embr.202051606

PMCID:: PMC8025004

Abstract Article PDF–2.4M

Select item 787948214.

Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes

Yeonji Chang, Gyubum Lim, Won-Ki Huh

J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060

PMCID:: PMC7879482

Abstract Article PDF–5.9M

Select item 786011915.

A glucose-starvation response governs endocytic trafficking and eisosomal retention of surface cargoes in budding yeast

Kamilla M. E. Laidlaw, Daniel D. Bisinski, Sviatlana Shashkova, Katherine M. Paine, Malaury A. Veillon, Mark C. Leake, Chris MacDonald

J Cell Sci. 2021 Jan 15; 134(2): jcs257733. Published online 2021 Jan 25. doi: 10.1242/jcs.257733

PMCID:: PMC7860119

Abstract Article

Select item 778159916.

Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress by the cooperation of AMPK and CK2 signaling

Seunghee Oh, Jaehyoun Lee, Selene K Swanson, Laurence Florens, Michael P Washburn, Jerry L Workman

eLife. 2020; 9: e64588. Published online 2020 Dec 29. doi: 10.7554/eLife.64588

PMCID:: PMC7781599

Abstract Article PDF–1.6M

Select item 772604217.

A putative bet hedging strategy buffers budding yeast against environmental instability

Laura E. Bagamery, Quincey A. Justman, Ethan C. Garner, Andrew W. Murray

Curr Biol. Author manuscript; available in PMC 2021 Dec 7.

Published in final edited form as: Curr Biol. 2020 Dec 7; 30(23): 4563–4578.e4. Published online 2020 Sep 24. doi: 10.1016/j.cub.2020.08.092

PMCID:: PMC7726042

Abstract Article PDF–1.9M

Select item 772147518.

A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits

Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister

Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030