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    Links from GEO Profiles

    Items: 19

    1.
    Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates
    Jennifer Raisch, Marie-Line Dubois, Marika Groleau, Dominique Lévesque, Thomas Burger, Carla-Marie Jurkovic, Romain Brailly, Gwendoline Marbach, Alyson McKenna, Catherine Barrette, Pierre-Étienne Jacques, François-Michel Boisvert
    Mol Cell Proteomics. 2023 Oct; 22(10): 100644. Published online 2023 Sep 7. doi: 10.1016/j.mcpro.2023.100644
    PMCID:
    PMC10565876
    ArticlePDF–3.7M
    2.
    The Significance of the 1-kinase / 1-phosphatase Activities of the PPIP5K Family
    Stephen B. Shears, Brandi M. Baughman, Chunfang Gu, Vasudha S. Nair, Huanchen Wang
    Adv Biol Regul. Author manuscript; available in PMC 2022 Aug 4.
    Published in final edited form as: Adv Biol Regul. 2017 Jan; 63: 98–106. Published online 2016 Oct 17. doi: 10.1016/j.jbior.2016.10.003
    PMCID:
    PMC9351041
    ArticlePDF–504K
    3.
    OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization
    Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti
    Science. Author manuscript; available in PMC 2022 Sep 11.
    Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983
    PMCID:
    PMC9119736
    ArticlePDF–3.3M
    4.
    Cullin 3 Exon 9 Deletion in Familial Hyperkalemic Hypertension Impairs Cullin3-Ring-E3 Ligase (CRL3) Dynamic Regulation and Cycling
    Ilektra Kouranti, Waed Abdel Khalek, Stephani Mazurkiewicz, Irmine Loisel-Ferreira, Alexis M. Gautreau, Lionel Pintard, Xavier Jeunemaitre, Eric Clauser
    Int J Mol Sci. 2022 May; 23(9): 5151. Published online 2022 May 5. doi: 10.3390/ijms23095151
    PMCID:
    PMC9105235
    ArticlePDF–5.8M
    5.
    Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
    Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
    Cell. Author manuscript; available in PMC 2022 May 27.
    Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
    PMCID:
    PMC8165030
    ArticlePDF–2.2M
    6.
    The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis
    Luisa Capalbo, Zuni I. Bassi, Marco Geymonat, Sofia Todesca, Liviu Copoiu, Anton J. Enright, Giuliano Callaini, Maria Giovanna Riparbelli, Lu Yu, Jyoti S. Choudhary, Enrico Ferrero, Sally Wheatley, Max E. Douglas, Masanori Mishima, Pier Paolo D’Avino
    Nat Commun. 2019; 10: 4513. Published online 2019 Oct 4. doi: 10.1038/s41467-019-12507-9
    PMCID:
    PMC6778137
    ArticlePDF–7.8M
    7.
    RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination
    Nila Roy Choudhury, Gregory Heikel, Maryia Trubitsyna, Peter Kubik, Jakub Stanislaw Nowak, Shaun Webb, Sander Granneman, Christos Spanos, Juri Rappsilber, Alfredo Castello, Gracjan Michlewski
    BMC Biol. 2017; 15: 105. Published online 2017 Nov 8. doi: 10.1186/s12915-017-0444-9
    PMCID:
    PMC5678581
    ArticlePDF–3.2M
    8.
    The Significance of the Bifunctional Kinase/Phosphatase Activities of Diphosphoinositol Pentakisphosphate Kinases (PPIP5Ks) for Coupling Inositol Pyrophosphate Cell Signaling to Cellular Phosphate Homeostasis
    Chunfang Gu, Hoai-Nghia Nguyen, Alexandre Hofer, Henning J. Jessen, Xuming Dai, Huanchen Wang, Stephen B. Shears
    J Biol Chem. 2017 Mar 17; 292(11): 4544–4555. Published online 2017 Jan 26. doi: 10.1074/jbc.M116.765743
    PMCID:
    PMC5377771
    ArticlePDF–2.0M
    9.
    High-throughput analyses of hnRNP H1 dissects its multi-functional aspect
    Philip J. Uren, Emad Bahrami-Samani, Patricia Rosa de Araujo, Christine Vogel, Mei Qiao, Suzanne C. Burns, Andrew D. Smith, Luiz O. F. Penalva
    RNA Biol. 2016 Apr; 13(4): 400–411. Published online 2016 Jan 13. doi: 10.1080/15476286.2015.1138030
    PMCID:
    PMC4841607
    ArticlePDF–1.6M
    10.
    Receptor-dependent compartmentalization of PPIP5K1, a kinase with a cryptic polyphosphoinositide binding domain
    Nikhil A. Gokhale, Angelika Zaremba, Stephen B. Shears
    Biochem J. Author manuscript; available in PMC 2014 Mar 24.
    Published in final edited form as: Biochem J. 2011 Mar 15; 434(3): 415–426. doi: 10.1042/BJ20101437
    PMCID:
    PMC3962999
    ArticlePDF–2.3M
    11.
    A Census of Human Soluble Protein Complexes
    Pierre C. Havugimana, G. Traver Hart, Tamás Nepusz, Haixuan Yang, Andrei L. Turinsky, Zhihua Li, Peggy I. Wang, Daniel R. Boutz, Vincent Fong, Sadhna Phanse, Mohan Babu, Stephanie A. Craig, Pingzhao Hu, Cuihong Wan, James Vlasblom, Vaqaarun-Nisa Dar, Alexander Bezginov, Gregory W. Clark, Gabriel C. Wu, Shoshana J. Wodak, Elisabeth R.M. Tillier, Alberto Paccanaro, Edward M. Marcotte, Andrew Emili
    Cell. Author manuscript; available in PMC 2013 Aug 31.
    Published in final edited form as: Cell. 2012 Aug 31; 150(5): 1068–1081. doi: 10.1016/j.cell.2012.08.011
    PMCID:
    PMC3477804
    ArticlePDF–7.7M
    12.
    Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
    Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
    Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
    PMCID:
    PMC3178059
    ArticlePDF–1.0M
    13.
    Structural Analysis and Detection of Biological Inositol Pyrophosphates Reveal That the Family of VIP/Diphosphoinositol Pentakisphosphate Kinases Are 1/3-Kinases
    Hongying Lin, Peter C. Fridy, Anthony A. Ribeiro, Jae H. Choi, Deb K. Barma, Günter Vogel, J. R. Falck, Stephen B. Shears, John D. York, Georg W. Mayr
    J Biol Chem. 2009 Jan 16; 284(3): 1863–1872. doi: 10.1074/jbc.M805686200
    PMCID:
    PMC2615522
    ArticlePDF–1.0M
    14.
    The tumour suppressor CYLD is a negative regulator of RIG-I-mediated antiviral response
    Constantin S Friedman, Marie Anne O'Donnell, Diana Legarda-Addison, Aylwin Ng, Washington B Cárdenas, Jacob S Yount, Thomas M Moran, Christopher F Basler, Akihiko Komuro, Curt M Horvath, Ramnik Xavier, Adrian T Ting
    EMBO Rep. 2008 Sep; 9(9): 930–936. Published online 2008 Jul 18. doi: 10.1038/embor.2008.136
    PMCID:
    PMC2529351
    ArticlePDF–833K
    15.
    Purification, Sequencing, and Molecular Identification of a Mammalian PP-InsP5 Kinase That Is Activated When Cells Are Exposed to Hyperosmotic Stress
    Jae H. Choi, Jason Williams, Jaiesoon Cho, J. R. Falck, Stephen B. Shears
    J Biol Chem. Author manuscript; available in PMC 2008 Oct 19.
    Published in final edited form as: J Biol Chem. 2007 Oct 19; 282(42): 30763–30775. Published online 2007 Aug 16. doi: 10.1074/jbc.M704655200
    PMCID:
    PMC2366029
    ArticlePDF–1.3M
    16.
    Structured RNAs in the ENCODE selected regions of the human genome
    Stefan Washietl, Jakob S. Pedersen, Jan O. Korbel, Claudia Stocsits, Andreas R. Gruber, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E. Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R. Gingeras, Roderic Guigó, Michael Snyder, Mark B. Gerstein, Alexandre Reymond, Ivo L. Hofacker, Peter F. Stadler
    Genome Res. 2007 Jun; 17(6): 852–864. doi: 10.1101/gr.5650707
    PMCID:
    PMC1891344
    ArticlePDF–1.2M
    17.
    Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
    Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
    Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406
    PMCID:
    PMC1356129
    ArticlePDF–438K
    18.
    Recognition of Unknown Conserved Alternatively Spliced Exons
    Uwe Ohler, Noam Shomron, Christopher B Burge
    PLoS Comput Biol. 2005 Jul; 1(2): e15. Published online 2005 Jul 8. doi: 10.1371/journal.pcbi.0010015
    PMCID:
    PMC1185642
    ArticlePDF–374K
    19.
    Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
    Mammalian Gene Collection (MGC) Program Team
    Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
    PMCID:
    PMC139241
    ArticlePDF–118K

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