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Items: 1 to 20 of 23

1.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
2.
Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling
Beatriz Garcia-Diaz, Corinne Bachelin, Fanny Coulpier, Gaspard Gerschenfeld, Cyrille Deboux, Violetta Zujovic, Patrick Charnay, Piotr Topilko, Anne Baron-Van Evercooren
Acta Neuropathol. 2019; 138(3): 457–476. Published online 2019 Apr 22. doi: 10.1007/s00401-019-02011-1
PMCID:
PMC6689289
AbstractArticlePDF–13M
3.
EphB Receptors Regulate Stem/Progenitor Cell Proliferation, Migration, and Polarity during Hippocampal Neurogenesis
Michael J. Chumley, Timothy Catchpole, Robert E. Silvany, Steven G. Kernie, Mark Henkemeyer
J Neurosci. 2007 Dec 5; 27(49): 13481–13490. doi: 10.1523/JNEUROSCI.4158-07.2007
PMCID:
PMC6673089
AbstractArticlePDF–598K
4.
Analysis of the association of EPHB6, EFNB1 and EFNB3 variants with hypertension risks in males with hypogonadism
Tao Wu, Bi-Qi Zhang, John Raelson, Yu-Mei Yao, Huan-Dong Wu, Zao-Xian Xu, Francois-christophe Marois-blanchet, Muhammad Ramzan Tahir, Yujia Wang, W. Edward Bradley, Hongyu Luo, Jiangping Wu, Jian-Zhong Sheng, Shen-Jiang Hu
Sci Rep. 2018; 8: 14497. Published online 2018 Sep 27. doi: 10.1038/s41598-018-32836-x
PMCID:
PMC6160468
AbstractArticlePDF–1.2M
5.
Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability
Hema Adhikari, Christopher M. Counter
Nat Commun. 2018; 9: 3646. Published online 2018 Sep 7. doi: 10.1038/s41467-018-05692-6
PMCID:
PMC6128905
AbstractArticlePDF–2.2M
6.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
7.
Evidence from single nucleotide polymorphism analyses of ADVANCE study demonstrates EFNB3 as a hypertension risk gene
Johanne Tremblay, Yujia Wang, John Raelson, Francois-Christophe Marois-Blanchet, Zenghui Wu, Hongyu Luo, Edward Bradley, John Chalmers, Mark Woodward, Stephen Harrap, Pavel Hamet, Jiangping Wu
Sci Rep. 2017; 7: 44114. Published online 2017 Mar 8. doi: 10.1038/srep44114
PMCID:
PMC5341021
AbstractArticlePDF–689K
8.
Ephrin B3 interacts with multiple EphA receptors and drives migration and invasion in non-small cell lung cancer
Ghazal Efazat, Metka Novak, Vitaliy O. Kaminskyy, Luigi De Petris, Lena Kanter, Therese Juntti, Per Bergman, Boris Zhivotovsky, Rolf Lewensohn, Petra Hååg, Kristina Viktorsson
Oncotarget. 2016 Sep 13; 7(37): 60332–60347. Published online 2016 Aug 11. doi: 10.18632/oncotarget.11219
PMCID:
PMC5312387
AbstractArticlePDF–10M
9.
The role of GRIP1 and ephrin B3 in blood pressure control and vascular smooth muscle cell contractility
Yujia Wang, Zenghui Wu, Hongyu Luo, Junzheng Peng, John Raelson, Georg B. Ehret, Patricia B. Munroe, Ekatherina Stoyanova, Zhao Qin, Guy Cloutier, W. Edward Bradley, Tao Wu, Jian-Zhong Shen, Shenjiang Hu, Jiangping Wu
Sci Rep. 2016; 6: 38976. Published online 2016 Dec 12. doi: 10.1038/srep38976
PMCID:
PMC5150233
AbstractArticlePDF–803K
10.
Antibody-mediated neutralization of myelin-associated EphrinB3 accelerates CNS remyelination
Yasir A. Syed, Chao Zhao, Don Mahad, Wiebke Möbius, Friedrich Altmann, Franziska Foss, Aycan Sentürk, Amparo Acker-Palmer, Gert Lubec, Kathryn Lilley, Robin J. M. Franklin, Klaus-A. Nave, Mark R. N. Kotter
Acta Neuropathol. 2016; 131(2): 281–298. Published online 2015 Dec 19. doi: 10.1007/s00401-015-1521-1
Correction in:
Acta Neuropathol. 2016; 132: 157.
Correction in:
Acta Neuropathol. 2017; 134(1): 167–168.
PMCID:
PMC4713754
AbstractArticlePDF–4.3M
11.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
12.
Structurally encoded intraclass differences in EphA clusters drive distinct cell responses
Elena Seiradake, Andreas Schaupp, Daniel del Toro Ruiz, Rainer Kaufmann, Nikolaos Mitakidis, Karl Harlos, A Radu Aricescu, Rüdiger Klein, E Yvonne Jones
Nat Struct Mol Biol. Author manuscript; available in PMC 2014 Mar 4.
Published in final edited form as: Nat Struct Mol Biol. 2013 Aug; 20(8): 958–964. Published online 2013 Jun 30. doi: 10.1038/nsmb.2617
PMCID:
PMC3941021
AbstractArticlePDF–2.7M
13.
Toward an understanding of the protein interaction network of the human liver
Jian Wang, Keke Huo, Lixin Ma, Liujun Tang, Dong Li, Xiaobi Huang, Yanzhi Yuan, Chunhua Li, Wei Wang, Wei Guan, Hui Chen, Chaozhi Jin, Junchen Wei, Wanqiao Zhang, Yongsheng Yang, Qiongming Liu, Ying Zhou, Cuili Zhang, Zhihao Wu, Wangxiang Xu, Ying Zhang, Tao Liu, Donghui Yu, Yaping Zhang, Liang Chen, Dewu Zhu, Xing Zhong, Lixin Kang, Xiang Gan, Xiaolan Yu, Qi Ma, Jing Yan, Li Zhou, Zhongyang Liu, Yunping Zhu, Tao Zhou, Fuchu He, Xiaoming Yang
Mol Syst Biol. 2011; 7: 536. Published online 2011 Oct 11. doi: 10.1038/msb.2011.67
Correction in:
Mol Syst Biol. 2017 Dec; 13(12): 965.
PMCID:
PMC3261708
AbstractArticlePDF–2.0M
14.
Genetic Susceptibility to Distinct Bladder Cancer Subphenotypes
Lin T. Guey, Montserrat García-Closas, Cristiane Murta-Nascimento, Josep Lloreta, Laia Palencia, Manolis Kogevinas, Nathaniel Rothman, Gemma Vellalta, Malu Calle, Gaëlle Marenne, Adonina Tardón, Alfredo Carrato, Reina García-Closas, Consol Serra, Debra T Silverman, Stephen Chanock, Francisco X. Real, Núria Malats
Eur Urol. Author manuscript; available in PMC 2011 Nov 18.
Published in final edited form as: Eur Urol. 2010 Feb; 57(2): 283–292. Published online 2009 Aug 12. doi: 10.1016/j.eururo.2009.08.001
PMCID:
PMC3220186
AbstractArticlePDF–595K
15.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
16.
Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway
H.Dean Hosgood, III, Idan Menashe, Min Shen, Meredith Yeager, Jeff Yuenger, Preetha Rajaraman, Xingzhou He, Nilanjan Chatterjee, Neil E. Caporaso, Yong Zhu, Stephen J. Chanock, Tongzhang Zheng, Qing Lan
Carcinogenesis. 2008 Oct; 29(10): 1938–1943. Published online 2008 Aug 1. doi: 10.1093/carcin/bgn178
PMCID:
PMC2722857
AbstractArticlePDF–181K
17.
Polymorphisms in innate immunity genes and lung cancer risk in Xuanwei, China
Min Shen, Roel Vermeulen, Preetha Rajaraman, Idan Menashe, Xingzhou He, Robert S. Chapman, Meredith Yeager, Gilles Thomas, Laurie Burdett, Amy Hutchinson, Jeff Yuenger, Stephen Chanock, Qing Lan
Environ Mol Mutagen. Author manuscript; available in PMC 2010 May 1.
Published in final edited form as: Environ Mol Mutagen. 2009 May; 50(4): 285–290. doi: 10.1002/em.20452
PMCID:
PMC2666781
AbstractArticlePDF–311K
18.
Host cell recognition by the henipaviruses: Crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3
Kai Xu, Kanagalaghatta R. Rajashankar, Yee-Peng Chan, Juha P. Himanen, Christopher C. Broder, Dimitar B. Nikolov
Proc Natl Acad Sci U S A. 2008 Jul 22; 105(29): 9953–9958. Published online 2008 Jul 16. doi: 10.1073/pnas.0804797105
PMCID:
PMC2474567
AbstractArticlePDF–1.4M
19.
Signal peptide prediction based on analysis of experimentally verified cleavage sites
Zemin Zhang, William J. Henzel
Protein Sci. 2004 Oct; 13(10): 2819–2824. doi: 10.1110/ps.04682504
PMCID:
PMC2286551
AbstractArticlePDF–125K
20.
Roles of Eph receptors and ephrins in segmental patterning.
Q Xu, G Mellitzer, D G Wilkinson
Philos Trans R Soc Lond B Biol Sci. 2000 Jul 29; 355(1399): 993–1002. doi: 10.1098/rstb.2000.0635
PMCID:
PMC1692797
SummaryPDF–514K

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