PMC Links for GEO Profiles (Select 132024798) - PMC

Select item 49135511.

Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs

Juhee Jeong, Xue Li, Robert J. McEvilly, Michael G. Rosenfeld, Thomas Lufkin, John L. R. Rubenstein

Development. Author manuscript; available in PMC 2016 Jun 20.

Published in final edited form as: Development. 2008 Sep; 135(17): 2905–2916. doi: 10.1242/dev.019778

PMCID:: PMC4913551

Abstract Article PDF–1005K

Select item 45290372.

Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling

Ivelisse Cajigas, David E. Leib, Jesse Cochrane, Hao Luo, Kelsey R. Swyter, Sean Chen, Brian S. Clark, James Thompson, John R. Yates, III, Robert E. Kingston, Jhumku D. Kohtz

Development. 2015 Aug 1; 142(15): 2641–2652. doi: 10.1242/dev.126318

PMCID:: PMC4529037

Abstract Article

Select item 39649643.

The Vertebrate Genome Annotation browser 10 years on

Jennifer L. Harrow, Charles A. Steward, Adam Frankish, James G. Gilbert, Jose M. Gonzalez, Jane E. Loveland, Jonathan Mudge, Dan Sheppard, Mark Thomas, Stephen Trevanion, Laurens G. Wilming

Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D771–D779. Published online 2013 Dec 6. doi: 10.1093/nar/gkt1241

PMCID:: PMC3964964

Abstract Article PDF–11M

Select item 38179464.

Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates

Jeremy A. Miller, Jason Nathanson, Daniel Franjic, Sungbo Shim, Rachel A. Dalley, Sheila Shapouri, Kimberly A. Smith, Susan M. Sunkin, Amy Bernard, Jeffrey L. Bennett, Chang-Kyu Lee, Michael J. Hawrylycz, Allan R. Jones, David G. Amaral, Nenad Sestan, Fred H. Gage, Ed S. Lein

Development. 2013 Nov 15; 140(22): 4633–4644. doi: 10.1242/dev.097212

PMCID:: PMC3817946

Abstract Article

Select item 36628055.

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo

Alexander D. Ramos, Aaron Diaz, Abhinav Nellore, Ryan N. Delgado, Ki-Youb Park, Gabriel Gonzales-Roybal, Michael C. Oldham, Jun S. Song, Daniel A. Lim

Cell Stem Cell. Author manuscript; available in PMC 2014 May 2.

Published in final edited form as: Cell Stem Cell. 2013 May 2; 12(5): 616–628. Published online 2013 Apr 11. doi: 10.1016/j.stem.2013.03.003

PMCID:: PMC3662805

Abstract Article PDF–3.8M

Select item 30137146.

lncRNAdb: a reference database for long noncoding RNAs

Paulo P. Amaral, Michael B. Clark, Dennis K. Gascoigne, Marcel E. Dinger, John S. Mattick

Nucleic Acids Res. 2011 Jan; 39(Database issue): D146–D151. Published online 2010 Nov 25. doi: 10.1093/nar/gkq1138

PMCID:: PMC3013714

Abstract Article PDF–3.0M

Select item 25277047.

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

Marcel E. Dinger, Paulo P. Amaral, Tim R. Mercer, Ken C. Pang, Stephen J. Bruce, Brooke B. Gardiner, Marjan E. Askarian-Amiri, Kelin Ru, Giulia Soldà, Cas Simons, Susan M. Sunkin, Mark L. Crowe, Sean M. Grimmond, Andrew C. Perkins, John S. Mattick

Genome Res. 2008 Sep; 18(9): 1433–1445. doi: 10.1101/gr.078378.108

PMCID:: PMC2527704

Abstract Article PDF–910K

Select item 3109928.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 3109809.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

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