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Select item 108247591.

RNA polymerase II pausing is essential during spermatogenesis for appropriate gene expression and completion of meiosis

Emily G. Kaye, Kavyashree Basavaraju, Geoffrey M. Nelson, Helena D. Zomer, Debarun Roy, Irene Infancy Joseph, Reza Rajabi-Toustani, Huanyu Qiao, Karen Adelman, Prabhakara P. Reddi

Nat Commun. 2024; 15: 848. Published online 2024 Jan 29. doi: 10.1038/s41467-024-45177-3

PMCID:: PMC10824759

Abstract Article PDF–2.6M

Select item 105910152.

An essential signaling function of cytoplasmic NELFB is independent of RNA polymerase II pausing

Haihui Pan, Xiaolong Cheng, Pedro Felipe Gardeazábal Rodríguez, Xiaowen Zhang, Inhee Chung, Victor X. Jin, Wei Li, Yanfen Hu, Rong Li

J Biol Chem. 2023 Nov; 299(11): 105259. Published online 2023 Sep 17. doi: 10.1016/j.jbc.2023.105259

PMCID:: PMC10591015

Abstract Article PDF–5.7M

Select item 94808563.

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

Abderhman Abuhashem, Alexandra G. Chivu, Yixin Zhao, Edward J. Rice, Adam Siepel, Charles G. Danko, Anna-Katerina Hadjantonakis

Genes Dev. 2022 Jul 1; 36(13-14): 770–789. doi: 10.1101/gad.349565.122

PMCID:: PMC9480856

Abstract Article PDF–11M

Select item 90212854.

RNA polymerase II pausing factor NELF in CD8⁺ T cells promotes antitumor immunity

Bogang Wu, Xiaowen Zhang, Huai-Chin Chiang, Haihui Pan, Bin Yuan, Payal Mitra, Leilei Qi, Hayk Simonyan, Colin N. Young, Eric Yvon, Yanfen Hu, Nu Zhang, Rong Li

Nat Commun. 2022; 13: 2155. Published online 2022 Apr 20. doi: 10.1038/s41467-022-29869-2

PMCID:: PMC9021285

Abstract Article PDF–2.1M

Select item 83571615.

Negative elongation factor regulates muscle progenitor expansion for efficient myofiber repair and stem cell pool repopulation

Daniel C.L. Robinson, Morten Ritso, Geoffrey M. Nelson, Zeinab Mokhtari, Kiran Nakka, Hina Bandukwala, Seth R. Goldman, Peter J. Park, Rémi Mounier, Bénédicte Chazaud, Marjorie Brand, Michael A. Rudnicki, Karen Adelman, F. Jeffrey Dilworth

Dev Cell. Author manuscript; available in PMC 2021 Oct 5.

Published in final edited form as: Dev Cell. 2021 Apr 5; 56(7): 1014–1029.e7. Published online 2021 Mar 17. doi: 10.1016/j.devcel.2021.02.025

PMCID:: PMC8357161

Abstract Article PDF–3.4M

Select item 79387706.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 72102947.

Negative elongation factor complex enables macrophage inflammatory responses by controlling anti-inflammatory gene expression

Li Yu, Bin Zhang, Dinesh Deochand, Maria A. Sacta, Maddalena Coppo, Yingli Shang, Ziyi Guo, Xiaomin Zeng, David A. Rollins, Bowranigan Tharmalingam, Rong Li, Yurii Chinenov, Inez Rogatsky, Xiaoyu Hu

Nat Commun. 2020; 11: 2286. Published online 2020 May 8. doi: 10.1038/s41467-020-16209-5

PMCID:: PMC7210294

Abstract Article PDF–1.9M

Select item 63386528.

Negative elongation factor is essential for endometrial function

Sylvia C. Hewitt, Rong Li, Nyssa Adams, Wipawee Winuthayanon, Katherine J. Hamilton, Lauren J. Donoghue, Sydney L. Lierz, Marleny Garcia, John P. Lydon, Francesco J. DeMayo, Karen Adelman, Kenneth S. Korach

FASEB J. 2019 Feb; 33(2): 3010–3023. Published online 2018 Oct 17. doi: 10.1096/fj.201801752

PMCID:: PMC6338652

Abstract Article

Select item 63334609.

ATG5 is required for B cell polarization and presentation of particulate antigens

Florent Arbogast, Johan Arnold, Philippe Hammann, Lauriane Kuhn, Johana Chicher, Diane Murera, Justine Weishaar, Sylviane Muller, Jean-Daniel Fauny, Frédéric Gros

Autophagy. 2019; 15(2): 280–294. Published online 2018 Sep 22. doi: 10.1080/15548627.2018.1516327

PMCID:: PMC6333460

Abstract Article PDF–2.7M

Select item 607334910.

BRCA1 Interacting Protein COBRA1 Facilitates Adaptation to Castrate-Resistant Growth Conditions

Huiyoung Yun, Roble Bedolla, Aaron Horning, Rong Li, Huai-Chin Chiang, Tim-H Huang, Robert Reddick, Aria F. Olumi, Rita Ghosh, Addanki P. Kumar

Int J Mol Sci. 2018 Jul; 19(7): 2104. Published online 2018 Jul 20. doi: 10.3390/ijms19072104

PMCID:: PMC6073349

Abstract Article PDF–2.7M

Select item 582145811.

Gene-specific mechanisms direct glucocorticoid-receptor-driven repression of inflammatory response genes in macrophages

Maria A Sacta, Bowranigan Tharmalingam, Maddalena Coppo, David A Rollins, Dinesh K Deochand, Bradley Benjamin, Li Yu, Bin Zhang, Xiaoyu Hu, Rong Li, Yurii Chinenov, Inez Rogatsky

eLife. 2018; 7: e34864. Published online 2018 Feb 9. doi: 10.7554/eLife.34864

PMCID:: PMC5821458

Abstract Article PDF–4.5M

Select item 580730412.

Gene-Specific Genetic Complementation between Brca1 and Cobra1 During Mouse Mammary Gland Development

Huai-Chin Chiang, Xiaowen Zhang, Xiayan Zhao, Chi Zhang, Jerry Chen, Paula Garza, Sabrina Smith, Thomas Ludwig, Richard J. Baer, Rong Li, Yanfen Hu

Sci Rep. 2018; 8: 2731. Published online 2018 Feb 9. doi: 10.1038/s41598-018-21044-2

PMCID:: PMC5807304

Abstract Article PDF–1.6M

Select item 549019113.

Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis

Xiaowen Zhang, Huai-Chin Chiang, Yao Wang, Chi Zhang, Sabrina Smith, Xiayan Zhao, Sreejith J. Nair, Joel Michalek, Ismail Jatoi, Meeghan Lautner, Boyce Oliver, Howard Wang, Anna Petit, Teresa Soler, Joan Brunet, Francesca Mateo, Miguel Angel Pujana, Elizabeth Poggi, Krysta Chaldekas, Claudine Isaacs, Beth N. Peshkin, Oscar Ochoa, Frederic Chedin, Constantine Theoharis, Lu-Zhe Sun, Tyler J. Curiel, Richard Elledge, Victor X. Jin, Yanfen Hu, Rong Li

Nat Commun. 2017; 8: 15908. Published online 2017 Jun 26. doi: 10.1038/ncomms15908

Correction in:: Nat Commun. 2018; 9: 16211.

PMCID:: PMC5490191

Abstract Article PDF–1.5M

Select item 478523214.

Genetic suppression reveals DNA repair-independent antagonism between BRCA1 and COBRA1 in mammary gland development

Sreejith J. Nair, Xiaowen Zhang, Huai-Chin Chiang, Md Jamiul Jahid, Yao Wang, Paula Garza, Craig April, Neeraj Salathia, Tapahsama Banerjee, Fahad S. Alenazi, Jianhua Ruan, Jian-Bing Fan, Jeffrey D. Parvin, Victor X. Jin, Yanfen Hu, Rong Li

Nat Commun. 2016; 7: 10913. Published online 2016 Mar 4. doi: 10.1038/ncomms10913

PMCID:: PMC4785232

Abstract Article PDF–1.5M

Select item 444435715.

Translational Initiation at a Non-AUG Start Codon for Human and Mouse Negative Elongation Factor-B

Haihui Pan, Xiayan Zhao, Xiaowen Zhang, Mohamed Abouelsoud, Jianlong Sun, Craig April, Asma Amleh, Jian-Bing Fan, Yanfen Hu, Rong Li

PLoS One. 2015; 10(5): e0127422. Published online 2015 May 26. doi: 10.1371/journal.pone.0127422

PMCID:: PMC4444357

Abstract Article PDF–1.7M

Select item 440215016.

Pausing of RNA polymerase II Regulates Mammalian Developmental Potential Through Control of Signaling Networks

Lucy H. Williams, George Fromm, Nolan G. Gokey, Telmo Henriques, Ginger W. Muse, Adam Burkholder, David C. Fargo, Guang Hu, Karen Adelman

Mol Cell. Author manuscript; available in PMC 2016 Apr 16.

Published in final edited form as: Mol Cell. 2015 Apr 16; 58(2): 311–322. Published online 2015 Mar 12. doi: 10.1016/j.molcel.2015.02.003

PMCID:: PMC4402150

Abstract Article PDF–3.0M

Select item 427725817.

Negative Elongation Factor Controls Energy Homeostasis in Cardiomyocytes

Haihui Pan, Kunhua Qin, Zhanyong Guo, Yonggang Ma, Craig April, Xiaoli Gao, Thomas G. Andrews, Alex Bokov, Jianhua Zhang, Yidong Chen, Susan T. Weintraub, Jian-Bing Fan, Degeng Wang, Yanfen Hu, Gregory J. Aune, Merry L. Lindsey, Rong Li

Cell Rep. Author manuscript; available in PMC 2014 Dec 26.

Published in final edited form as: Cell Rep. 2014 Apr 10; 7(1): 79–85. Published online 2014 Mar 20. doi: 10.1016/j.celrep.2014.02.028

PMCID:: PMC4277258

Abstract Article PDF–1.1M

Select item 376755318.

Glucocorticoid receptor represses proinflammatory genes at distinct steps of the transcription cycle

Rebecca Gupte, Ginger W. Muse, Yurii Chinenov, Karen Adelman, Inez Rogatsky

Proc Natl Acad Sci U S A. 2013 Sep 3; 110(36): 14616–14621. Published online 2013 Aug 15. doi: 10.1073/pnas.1309898110

PMCID:: PMC3767553

Abstract Article PDF–828K

Select item 357241019.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 319609220.

Genetic and Genomic Analyses of RNA Polymerase II-pausing Factor in Regulation of Mammalian Transcription and Cell Growth

Jianlong Sun, Haihui Pan, Chengwei Lei, Bin Yuan, Sreejith J. Nair, Craig April, Balaji Parameswaran, Brandy Klotzle, Jian-Bing Fan, Jianhua Ruan, Rong Li

J Biol Chem. 2011 Oct 21; 286(42): 36248–36257. Published online 2011 Aug 24. doi: 10.1074/jbc.M111.269167

PMCID:: PMC3196092

Abstract Article PDF–1.3M

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