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Items: 1 to 20 of 62

1.
The BAF chromatin complex component SMARCC1 does not mediate GLI transcriptional repression of Hedgehog target genes in limb buds
Janani Ramachandran, Wanlu Chen, Rachel K. Lex, Kathryn E. Windsor, Hyunji Lee, Tingchang Wang, Weiqiang Zhou, Hongkai Ji, Steven A. Vokes
Dev Biol. Author manuscript; available in PMC 2024 Dec 2.
Published in final edited form as: Dev Biol. 2023 Dec; 504: 128–136. Published online 2023 Oct 5. doi: 10.1016/j.ydbio.2023.10.001
PMCID:
PMC11610522
AbstractArticlePDF–1.7M
2.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
3.
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development
Francesco Bedogni, Robert F. Hevner
Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034
PMCID:
PMC8313239
AbstractArticlePDF–1.6M
4.
TWIST1 and chromatin regulatory proteins interact to guide neural crest cell differentiation
Xiaochen Fan, V Pragathi Masamsetti, Jane QJ Sun, Kasper Engholm-Keller, Pierre Osteil, Joshua Studdert, Mark E Graham, Nicolas Fossat, Patrick PL Tam
eLife. 2021; 10: e62873. Published online 2021 Feb 8. doi: 10.7554/eLife.62873
PMCID:
PMC7968925
AbstractArticlePDF–4.0M
5.
The core SWI/SNF catalytic subunit Brg1 regulates nephron progenitor cell proliferation and differentiation
Jeannine M. Basta, Ajeet P. Singh, Lynn Robbins, Lisa Stout, Michelle Pherson, Michael Rauchman
Dev Biol. Author manuscript; available in PMC 2020 Sep 27.
Published in final edited form as: Dev Biol. 2020 Aug 15; 464(2): 176–187. Published online 2020 Jun 3. doi: 10.1016/j.ydbio.2020.05.008
PMCID:
PMC7520014
AbstractArticlePDF–2.6M
6.
Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells
Samudyata, Paulo P. Amaral, Pär G. Engström, Samuel C. Robson, Michael L. Nielsen, Tony Kouzarides, Gonçalo Castelo-Branco
Exp Cell Res. Author manuscript; available in PMC 2020 Aug 1.
Published in final edited form as: Exp Cell Res. 2019 Aug 1; 381(1): 129–138. Published online 2019 May 9. doi: 10.1016/j.yexcr.2019.05.006
PMCID:
PMC6994247
AbstractArticlePDF–1.6M
7.
Methyltransferase-like 21e inhibits 26S proteasome activity to facilitate hypertrophy of type IIb myofibers
Chao Wang, Bin Zhang, Anna C. Ratliff, Justine Arrington, Jingjuan Chen, Yan Xiong, Feng Yue, Yaohui Nie, Keping Hu, Wen Jin, W. Andy Tao, Christine A. Hrycyna, Xiaobo Sun, Shihuan Kuang
FASEB J. 2019 Aug; 33(8): 9672–9684. Published online 2019 Jun 4. doi: 10.1096/fj.201900582R
PMCID:
PMC6993925
AbstractArticle
8.
LIM-domain transcription complexes interact with ring-finger ubiquitin ligases and thereby impact islet β-cell function
Alexa K. Wade, Yanping Liu, Maigen M. Bethea, Eliana Toren, Hubert M. Tse, Chad S. Hunter
J Biol Chem. 2019 Aug 2; 294(31): 11728–11740. Published online 2019 Jun 11. doi: 10.1074/jbc.RA118.006985
PMCID:
PMC6682733
AbstractArticlePDF–3.1M
9.
MicroRNA-9 Regulates Neurogenesis in Mouse Telencephalon by Targeting Multiple Transcription Factors
Mikihito Shibata, Hiromi Nakao, Hiroshi Kiyonari, Takaya Abe, Shinichi Aizawa
J Neurosci. 2011 Mar 2; 31(9): 3407–3422. doi: 10.1523/JNEUROSCI.5085-10.2011
PMCID:
PMC6623912
AbstractArticlePDF–7.1M
10.
Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors
Hyeonwoo Kim, Christiane D. Wrann, Mark Jedrychowski, Sara Vidoni, Yukiko Kitase, Kenichi Nagano, Chenhe Zhou, Joshua Chou, Virginia-Jeni A. Parkman, Scott J. Novick, Timothy S. Strutzenberg, Bruce D. Pascal, Phuong T. Le, Daniel J. Brooks, Alexander M. Roche, Kaitlyn K. Gerber, Laura Mattheis, Wenjing Chen, Hua Tu, Mary L. Bouxsein, Patrick R. Griffin, Roland Baron, Clifford J. Rosen, Lynda F. Bonewald, Bruce M. Spiegelman
Cell. Author manuscript; available in PMC 2019 Dec 13.
Published in final edited form as: Cell. 2018 Dec 13; 175(7): 1756–1768.e17. doi: 10.1016/j.cell.2018.10.025
Correction in:
Cell. 2019 Jul 11; 178(2): 507–508.
PMCID:
PMC6298040
AbstractArticlePDF–1.2M
11.
Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells
Sunyuan Zhang, Nicholas A. Williamson, Marie A. Bogoyevitch
Sci Data. 2018; 5: 180262. Published online 2018 Nov 20. doi: 10.1038/sdata.2018.262
PMCID:
PMC6244183
AbstractArticlePDF–753K
12.
The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1
Gina E. Elsen, Francesco Bedogni, Rebecca D. Hodge, Theo K. Bammler, James W. MacDonald, Susan Lindtner, John L. R. Rubenstein, Robert F. Hevner
Front Neurosci. 2018; 12: 571. Published online 2018 Aug 22. doi: 10.3389/fnins.2018.00571
PMCID:
PMC6113890
AbstractArticlePDF–4.8M
13.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
14.
Requirement for PBAF in Transcriptional Repression and Repair at DNA Breaks in Actively Transcribed Regions of Chromatin
Andreas Kakarougkas, Amani Ismail, Anna L. Chambers, Enriqueta Riballo, Alex D. Herbert, Julia Künzel, Markus Löbrich, Penny A. Jeggo, Jessica A. Downs
Mol Cell. 2014 Sep 4; 55(5): 723–732. doi: 10.1016/j.molcel.2014.06.028
PMCID:
PMC4157577
AbstractArticle
15.
Analysis of the SWI/SNF chromatin-remodeling complex during early heart development and BAF250a repression cardiac gene transcription during P19 cell differentiation
Ajeet Pratap Singh, Trevor K. Archer
Nucleic Acids Res. 2014 Mar; 42(5): 2958–2975. Published online 2013 Dec 13. doi: 10.1093/nar/gkt1232
PMCID:
PMC3950667
AbstractArticlePDF–4.6M
16.
Loss of the tumor suppressor Snf5 leads to aberrant activation of the Hedgehog-Gli pathway
Zainab Jagani, E Lorena Mora-Blanco, Courtney G Sansam, Elizabeth S McKenna, Boris Wilson, Dongshu Chen, Justin Klekota, Pablo Tamayo, Phuong T L Nguyen, Michael Tolstorukov, Peter J Park, Yoon-Jae Cho, Kathy Hsiao, Silvia Buonamici, Scott L Pomeroy, Jill P Mesirov, Heinz Ruffner, Tewis Bouwmeester, Sarah J Luchansky, Joshua Murtie, Joseph F Kelleher, Markus Warmuth, William R Sellers, Charles W M Roberts, Marion Dorsch
Nat Med. Author manuscript; available in PMC 2013 Dec 11.
Published in final edited form as: Nat Med. 2010 Dec; 16(12): 10.1038/nm.2251. Published online 2010 Nov 14. doi: 10.1038/nm.2251
PMCID:
PMC3859448
AbstractArticlePDF–913K
17.
The AERO System: A 3D-Like Approach for Recording Gene Expression Patterns in the Whole Mouse Embryo
Hirohito Shimizu, Atsushi Kubo, Kenta Uchibe, Megumi Hashimoto, Shigetoshi Yokoyama, Shuji Takada, Kazuhiko Mitsuoka, Hiroshi Asahara
PLoS One. 2013; 8(10): e75754. Published online 2013 Oct 16. doi: 10.1371/journal.pone.0075754
PMCID:
PMC3797748
AbstractArticlePDF–564K
18.
mSWI/SNF (BAF) Complexes Facilitate Decatentation of DNA by Topoisomerase IIa
Emily C. Dykhuizen, Diana C. Hargreaves, Erik Miller, Kairong Cui, Andrey Korshunov, Marcel Kool, Stefan Pfister, Yoon-Jae Cho, Keji Zhao, Gerald R. Crabtree
Nature. Author manuscript; available in PMC 2013 Nov 30.
Published in final edited form as: Nature. 2013 May 30; 497(7451): 624–627. Published online 2013 May 22. doi: 10.1038/nature12146
PMCID:
PMC3668793
AbstractArticlePDF–1.6M
19.
LoxP-FRT Trap (LOFT): a simple and flexible system for conventional and reversible gene targeting
Barbara H Chaiyachati, Ravinder K Kaundal, Jiugang Zhao, Jie Wu, Richard Flavell, Tian Chi
BMC Biol. 2012; 10: 96. Published online 2012 Nov 30. doi: 10.1186/1741-7007-10-96
PMCID:
PMC3529186
AbstractArticlePDF–735K
20.
Transcription factor Foxp3 and its protein partners form a complex regulatory network
Dipayan Rudra, Paul deRoos, Ashutosh Chaudhry, Rachel Niec, Aaron Arvey, Robert M. Samstein, Christina Leslie, Scott A. Shaffer, David R. Goodlett, Alexander Y. Rudensky
Nat Immunol. Author manuscript; available in PMC 2013 Apr 1.
Published in final edited form as: Nat Immunol. 2012 Oct; 13(10): 1010–1019. Published online 2012 Aug 26. doi: 10.1038/ni.2402
PMCID:
PMC3448012
AbstractArticlePDF–2.6M

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