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Items: 1 to 20 of 51

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
Identification and characterization of protein interactions with the major Niemann–Pick type C disease protein in yeast reveals pathways of therapeutic potential
Natalie Hammond, Jamie Snider, Igor Stagljar, Kevin Mitchell, Kirill Lagutin, Matthew Jessulat, Mohan Babu, Paul H Teesdale-Spittle, Jeffrey P Sheridan, Stephen L Sturley, Andrew B Munkacsi
Genetics. 2023 Sep; 225(1): iyad129. Published online 2023 Jul 13. doi: 10.1093/genetics/iyad129
PMCID:
PMC10471228
AbstractArticlePDF–32M
3.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
8.
Mapping bilayer thickness in the ER membrane
Rupali Prasad, Andrzej Sliwa-Gonzalez, Yves Barral
Sci Adv. 2020 Nov; 6(46): eaba5130. Published online 2020 Nov 11. doi: 10.1126/sciadv.aba5130
PMCID:
PMC7673731
AbstractArticlePDF–1.0M
9.
Suppressing Aneuploidy-Associated Phenotypes Improves the Fitness of Trisomy 21 Cells
Sunyoung Hwang, Jessica F. Williams, Maja Kneissig, Maria Lioudyno, Isabel Rivera, Pablo Helguera, Jorge Busciglio, Zuzana Storchova, Megan C. King, Eduardo M. Torres
Cell Rep. Author manuscript; available in PMC 2019 Dec 2.
Published in final edited form as: Cell Rep. 2019 Nov 19; 29(8): 2473–2488.e5. doi: 10.1016/j.celrep.2019.10.059
PMCID:
PMC6886690
AbstractArticlePDF–2.9M
10.
Yeast ceramide synthases, Lag1 and Lac1, have distinct substrate specificity
Márton Megyeri, Rupali Prasad, Giora Volpert, Andrzej Sliwa-Gonzalez, A. Galih Haribowo, Auxiliadora Aguilera-Romero, Howard Riezman, Yves Barral, Anthony H. Futerman, Maya Schuldiner
J Cell Sci. 2019 Jun 15; 132(12): jcs228411. Published online 2019 Jun 24. doi: 10.1242/jcs.228411
PMCID:
PMC6602303
AbstractArticle
11.
Modulation of TORC2 Signaling by a Conserved Lkb1 Signaling Axis in Budding Yeast
Maria Alcaide-Gavilán, Rafael Lucena, Katherine A. Schubert, Karen L. Artiles, Jessica Zapata, Douglas R. Kellogg
Genetics. 2018 Sep; 210(1): 155–170. Published online 2018 Jul 9. doi: 10.1534/genetics.118.301296
PMCID:
PMC6116957
AbstractArticlePDF–1.7M
12.
Cell size and growth rate are modulated by TORC2-dependent signals
Rafael Lucena, Maria Alcaide-Gavilán, Katherine Schubert, Maybo He, Matthew Domnauer, Catherine Marquer, Christian Klose, Michal A. Surma, Douglas R. Kellogg
Curr Biol. Author manuscript; available in PMC 2019 Jan 22.
Published in final edited form as: Curr Biol. 2018 Jan 22; 28(2): 196–210.e4. Published online 2017 Dec 28. doi: 10.1016/j.cub.2017.11.069
PMCID:
PMC5787035
AbstractArticlePDF–1.7M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
Chemical crosslinking and mass spectrometry to elucidate the topology of integral membrane proteins
Mykhaylo O. Debelyy, Patrice Waridel, Manfredo Quadroni, Roger Schneiter, Andreas Conzelmann
PLoS One. 2017; 12(10): e0186840. Published online 2017 Oct 26. doi: 10.1371/journal.pone.0186840
PMCID:
PMC5658093
AbstractArticlePDF–3.9M
15.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
16.
Chemogenetic E-MAP in Saccharomyces cerevisiae for Identification of Membrane Transporters Operating Lipid Flip Flop
Hector M. Vazquez, Christine Vionnet, Carole Roubaty, Shamroop k. Mallela, Roger Schneiter, Andreas Conzelmann
PLoS Genet. 2016 Jul; 12(7): e1006160. Published online 2016 Jul 27. doi: 10.1371/journal.pgen.1006160
PMCID:
PMC4962981
AbstractArticlePDF–7.8M
17.
Ceramide signals for initiation of yeast mating-specific cell cycle arrest
Michelle L. Villasmil, Jamie Francisco, Christina Gallo-Ebert, Melissa Donigan, Hsing-Yin Liu, Melody Brower, Joseph T. Nickels, Jr.
Cell Cycle. 2016; 15(3): 441–454. Published online 2016 Jan 4. doi: 10.1080/15384101.2015.1127475
PMCID:
PMC4943704
AbstractArticlePDF–1.0M
18.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
19.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
20.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K

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