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Items: 1 to 20 of 30

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Cryo-EM structure of catalytic ribonucleoprotein complex RNase MRP
Anna Perederina, Di Li, Hyunwook Lee, Carol Bator, Igor Berezin, Susan L. Hafenstein, Andrey S. Krasilnikov
Nat Commun. 2020; 11: 3474. Published online 2020 Jul 10. doi: 10.1038/s41467-020-17308-z
PMCID:
PMC7351766
AbstractArticlePDF–3.7M
4.
In vitro reconstitution and analysis of eukaryotic RNase P RNPs
Anna Perederina, Igor Berezin, Andrey S Krasilnikov
Nucleic Acids Res. 2018 Jul 27; 46(13): 6857–6868. Published online 2018 May 2. doi: 10.1093/nar/gky333
PMCID:
PMC6061874
AbstractArticlePDF–2.1M
5.
Structural and functional analysis of ribosome assembly factor Efg1
Sheng Shu, Keqiong Ye
Nucleic Acids Res. 2018 Feb 28; 46(4): 2096–2106. Published online 2018 Jan 18. doi: 10.1093/nar/gky011
PMCID:
PMC5829643
AbstractArticlePDF–7.8M
6.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
7.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
8.
Active yeast telomerase shares subunits with ribonucleoproteins RNase P and RNase MRP
Bruno Lemieux, Nancy Laterreur, Anna Perederina, Jean-François Noël, Marie-Line Dubois, Andrey S. Krasilnikov, Raymund J. Wellinger
Cell. Author manuscript; available in PMC 2017 May 19.
Published in final edited form as: Cell. 2016 May 19; 165(5): 1171–1181. Published online 2016 May 5. doi: 10.1016/j.cell.2016.04.018
PMCID:
PMC4874874
AbstractArticlePDF–1.3M
9.
Conserved regions of ribonucleoprotein ribonuclease MRP are involved in interactions with its substrate
Olga Esakova, Anna Perederina, Igor Berezin, Andrey S. Krasilnikov
Nucleic Acids Res. 2013 Aug; 41(14): 7084–7091. Published online 2013 May 21. doi: 10.1093/nar/gkt432
PMCID:
PMC3737539
AbstractArticlePDF–1.9M
10.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
11.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
12.
Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA–protein interactions
Elena Khanova, Olga Esakova, Anna Perederina, Igor Berezin, Andrey S. Krasilnikov
RNA. 2012 Apr; 18(4): 720–728. doi: 10.1261/rna.030874.111
PMCID:
PMC3312559
AbstractArticlePDF–1.4M
13.
La-motif–dependent mRNA association with Slf1 promotes copper detoxification in yeast
Luca Schenk, Dominik M. Meinel, Katja Strässer, André P. Gerber
RNA. 2012 Mar; 18(3): 449–461. doi: 10.1261/rna.028506.111
PMCID:
PMC3285933
AbstractArticlePDF–812K
14.
Interactions of a Pop5/Rpp1 heterodimer with the catalytic domain of RNase MRP
Anna Perederina, Elena Khanova, Chao Quan, Igor Berezin, Olga Esakova, Andrey S. Krasilnikov
RNA. 2011 Oct; 17(10): 1922–1931. doi: 10.1261/rna.2855511
PMCID:
PMC3185923
AbstractArticlePDF–2.4M
15.
Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae
Michael C. Marvin, Sandra Clauder-Münster, Scott C. Walker, Ali Sarkeshik, John R. Yates, III, Lars M. Steinmetz, David R. Engelke
RNA. 2011 Aug; 17(8): 1441–1450. doi: 10.1261/rna.2737511
PMCID:
PMC3153969
AbstractArticlePDF–890K
16.
Binding and cleavage of unstructured RNA by nuclear RNase P
Michael C. Marvin, Scott C. Walker, Carol A. Fierke, David R. Engelke
RNA. 2011 Aug; 17(8): 1429–1440. doi: 10.1261/rna.2633611
PMCID:
PMC3153968
AbstractArticlePDF–938K
17.
The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components
Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter
PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057
PMCID:
PMC3084213
AbstractArticlePDF–710K
18.
Comparison of mitochondrial and nucleolar RNase MRP reveals identical RNA components with distinct enzymatic activities and protein components
Qiaosheng Lu, Sara Wierzbicki, Andrey S. Krasilnikov, Mark E. Schmitt
RNA. 2010 Mar; 16(3): 529–537. doi: 10.1261/rna.1893710
PMCID:
PMC2822918
AbstractArticlePDF–528K
19.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
20.
Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release
John Hsieh, Scott C. Walker, Carol A. Fierke, David R. Engelke
RNA. 2009 Feb; 15(2): 224–234. doi: 10.1261/rna.1309409
PMCID:
PMC2648709
AbstractArticlePDF–863K

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