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Items: 1 to 20 of 37

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Yeast phospholipase C is required for stability of casein kinase I Yck2p and expression of hexose transporters
Tiantian Zhang, Luciano Galdieri, Jiri Hasek, Ales Vancura
FEMS Microbiol Lett. 2017 Nov; 364(22): fnx227. Published online 2017 Oct 26. doi: 10.1093/femsle/fnx227
PMCID:
PMC5827616
AbstractArticlePDF–1.6M
5.
The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability
Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx
PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835
PMCID:
PMC5484544
AbstractArticlePDF–14M
6.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
7.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
8.
The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation
Lydia M. Castelli, David Talavera, Christopher J. Kershaw, Sarah S. Mohammad-Qureshi, Joseph L. Costello, William Rowe, Paul F. G. Sims, Christopher M. Grant, Simon J. Hubbard, Mark P. Ashe, Graham D. Pavitt
PLoS Genet. 2015 May; 11(5): e1005233. Published online 2015 May 14. doi: 10.1371/journal.pgen.1005233
PMCID:
PMC4431810
AbstractArticlePDF–5.5M
9.
Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control
Irene Gallina, Camilla Colding, Peter Henriksen, Petra Beli, Kyosuke Nakamura, Judith Offman, David P. Mathiasen, Sonia Silva, Eva Hoffmann, Anja Groth, Chunaram Choudhary, Michael Lisby
Nat Commun. 2015 Mar 30; 6: 6533. Published online 2015 Mar 30. doi: 10.1038/ncomms7533
PMCID:
PMC4389229
AbstractArticlePDF–3.1M
10.
Early Steps in Autophagy Depend on Direct Phosphorylation of Atg9 by the Atg1 Kinase
Daniel Papinski, Martina Schuschnig, Wolfgang Reiter, Larissa Wilhelm, Christopher A. Barnes, Alessio Maiolica, Isabella Hansmann, Thaddaeus Pfaffenwimmer, Monika Kijanska, Ingrid Stoffel, Sung Sik Lee, Andrea Brezovich, Jane Hua Lou, Benjamin E. Turk, Ruedi Aebersold, Gustav Ammerer, Matthias Peter, Claudine Kraft
Mol Cell. 2014 Feb 6; 53(3): 471–483. doi: 10.1016/j.molcel.2013.12.011
Correction in:
Mol Cell. 2014 Feb 6; 53(3): 515.
PMCID:
PMC3978657
AbstractArticle
11.
Whi3, an S. cerevisiae RNA-Binding Protein, Is a Component of Stress Granules That Regulates Levels of Its Target mRNAs
Kristen J. Holmes, Daniel M. Klass, Evan L. Guiney, Martha S. Cyert
PLoS One. 2013; 8(12): e84060. Published online 2013 Dec 27. doi: 10.1371/journal.pone.0084060
PMCID:
PMC3873981
AbstractArticlePDF–11M
12.
Yeast Phospholipase C Is Required for Normal Acetyl-CoA Homeostasis and Global Histone Acetylation
Luciano Galdieri, Jennifer Chang, Swati Mehrotra, Ales Vancura
J Biol Chem. 2013 Sep 27; 288(39): 27986–27998. Published online 2013 Aug 2. doi: 10.1074/jbc.M113.492348
PMCID:
PMC3784712
AbstractArticlePDF–1.9M
13.
A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae
Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis
BMC Genomics. 2013; 14: 251. Published online 2013 Apr 15. doi: 10.1186/1471-2164-14-251
PMCID:
PMC3637596
AbstractArticlePDF–2.0M
14.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
15.
Inositol Pyrophosphates Modulate S Phase Progression after Pheromone-induced Arrest in Saccharomyces cerevisiae
Hrvoje Banfic, Antonio Bedalov, John D. York, Dora Visnjic
J Biol Chem. 2013 Jan 18; 288(3): 1717–1725. Published online 2012 Nov 24. doi: 10.1074/jbc.M112.412288
PMCID:
PMC3548482
AbstractArticlePDF–1.3M
16.
The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing
Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie
PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101
PMCID:
PMC3510044
AbstractArticlePDF–3.4M
17.
De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology
Jurgen F Nijkamp, Marcel van den Broek, Erwin Datema, Stefan de Kok, Lizanne Bosman, Marijke A Luttik, Pascale Daran-Lapujade, Wanwipa Vongsangnak, Jens Nielsen, Wilbert HM Heijne, Paul Klaassen, Chris J Paddon, Darren Platt, Peter Kötter, Roeland C van Ham, Marcel JT Reinders, Jack T Pronk, Dick de Ridder, Jean-Marc Daran
Microb Cell Fact. 2012; 11: 36. Published online 2012 Mar 26. doi: 10.1186/1475-2859-11-36
PMCID:
PMC3364882
AbstractArticlePDF–2.5M
18.
MHO1, an Evolutionarily Conserved Gene, Is Synthetic Lethal with PLC1; Mho1p Has a Role in Invasive Growth
Ivan D. Schlatter, Maria Meira, Vanessa Ueberschlag, Dominic Hoepfner, Rao Movva, Nancy E. Hynes
PLoS One. 2012; 7(3): e32501. Published online 2012 Mar 7. doi: 10.1371/journal.pone.0032501
PMCID:
PMC3296727
AbstractArticlePDF–5.2M
19.
Facilitated Assembly of the Preinitiation Complex by Separated Tail and Head/Middle Modules of the Mediator
Luciano Galdieri, Parima Desai, Ales Vancura
J Mol Biol. Author manuscript; available in PMC 2013 Jan 20.
Published in final edited form as: J Mol Biol. 2012 Jan 20; 415(3): 464–474. Published online 2011 Nov 23. doi: 10.1016/j.jmb.2011.11.020
PMCID:
PMC3259248
AbstractArticlePDF–915K
20.
An integrated approach to characterize genetic interaction networks in yeast metabolism
Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp
Nat Genet. Author manuscript; available in PMC 2012 Jan 1.
Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846
PMCID:
PMC3125439
AbstractArticlePDF–2.5M

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