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Items: 16

1.
Effect of iclR and arcA knockouts on biomass formation and metabolic fluxes in Escherichia coli K12 and its implications on understanding the metabolism of Escherichia coli BL21 (DE3)
Hendrik Waegeman, Joeri Beauprez, Helena Moens, Jo Maertens, Marjan De Mey, Maria R Foulquié-Moreno, Joseph J Heijnen, Daniel Charlier, Wim Soetaert
BMC Microbiol. 2011; 11: 70. Published online 2011 Apr 11. doi: 10.1186/1471-2180-11-70
PMCID:
PMC3094197
AbstractArticlePDF–1.2M
2.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
3.
Preparation and properties of pure, full-length IclR protein of Escherichia coli. Use of time-of-flight mass spectrometry to investigate the problems encountered.
L. J. Donald, I. V. Chernushevich, J. Zhou, A. Verentchikov, N. Poppe-Schriemer, D. J. Hosfield, J. B. Westmore, W. Ens, H. W. Duckworth, K. G. Standing
Protein Sci. 1996 Aug; 5(8): 1613–1624. doi: 10.1002/pro.5560050815
PMCID:
PMC2143496
SummaryPDF–2.1M
4.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
5.
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806
PMCID:
PMC1457052
AbstractArticlePDF–536K
6.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
7.
Regulation of the acetate operon in Escherichia coli: purification and functional characterization of the IclR repressor.
J C Cortay, D Nègre, A Galinier, B Duclos, G Perrière, A J Cozzone
EMBO J. 1991 Mar; 10(3): 675–679. doi: 10.1002/j.1460-2075.1991.tb07996.x
PMCID:
PMC452701
SummaryPage BrowsePDF–1.0M
8.
Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes.
F R Blattner, V Burland, G Plunkett, 3rd, H J Sofia, D L Daniels
Nucleic Acids Res. 1993 Nov 25; 21(23): 5408–5417. doi: 10.1093/nar/21.23.5408
PMCID:
PMC310579
SummaryPage BrowsePDF–1.8M
9.
Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region.
N Fujita, H Mori, T Yura, A Ishihama
Nucleic Acids Res. 1994 May 11; 22(9): 1637–1639. doi: 10.1093/nar/22.9.1637
PMCID:
PMC308041
SummaryPage BrowsePDF–500K
10.
The binding site of the IclR repressor protein overlaps the promoter of aceBAK.
B Pan, I Unnikrishnan, D C LaPorte
J Bacteriol. 1996 Jul; 178(13): 3982–3984. doi: 10.1128/jb.178.13.3982-3984.1996
PMCID:
PMC232666
SummaryPDF–234K
11.
Genetic regulation of the glyoxylate shunt in Escherichia coli K-12.
S R Maloy, W D Nunn
J Bacteriol. 1982 Jan; 149(1): 173–180. doi: 10.1128/jb.149.1.173-180.1982
Correction in:
J Bacteriol. 1982 Jun; 150(3): 1495.
PMCID:
PMC216607
SummaryPage BrowsePDF–1.1M
12.
Regulation of the glyoxylate bypass operon: cloning and characterization of iclR.
A Sunnarborg, D Klumpp, T Chung, D C LaPorte
J Bacteriol. 1990 May; 172(5): 2642–2649. doi: 10.1128/jb.172.5.2642-2649.1990
PMCID:
PMC208908
SummaryPage BrowsePDF–1.3M
13.
Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence
Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602
PMCID:
PMC187528
AbstractArticlePDF–192K
14.
Regulated expression of a repressor protein: FadR activates iclR.
L Gui, A Sunnarborg, D C LaPorte
J Bacteriol. 1996 Aug; 178(15): 4704–4709. doi: 10.1128/jb.178.15.4704-4709.1996
PMCID:
PMC178242
SummaryPDF–295K
15.
Integration host factor amplifies the induction of the aceBAK operon of Escherichia coli by relieving IclR repression.
E Resnik, B Pan, N Ramani, M Freundlich, D C LaPorte
J Bacteriol. 1996 May; 178(9): 2715–2717. doi: 10.1128/jb.178.9.2715-2717.1996
PMCID:
PMC178001
SummaryPDF–213K
16.
Autoregulation of iclR, the gene encoding the repressor of the glyoxylate bypass operon.
L Gui, A Sunnarborg, B Pan, D C LaPorte
J Bacteriol. 1996 Jan; 178(1): 321–324. doi: 10.1128/jb.178.1.321-324.1996
PMCID:
PMC177660
SummaryPDF–350K

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