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Items: 1 to 20 of 33

1.
RfaH Counter-Silences Inhibition of Transcript Elongation by H-NS–StpA Nucleoprotein Filaments in Pathogenic Escherichiacoli
Christine M. Hustmyer, Michael B. Wolfe, Rodney A. Welch, Robert Landick
mBio. 2022 Nov-Dec; 13(6): e02662-22. Published online 2022 Oct 20. doi: 10.1128/mbio.02662-22
PMCID:
PMC9765446
AbstractArticlePDF–4.9M
2.
Structural and thermodynamic analyses of the β-to-α transformation in RfaH reveal principles of fold-switching proteins
Philipp K Zuber, Tina Daviter, Ramona Heißmann, Ulrike Persau, Kristian Schweimer, Stefan H Knauer
eLife. 2022; 11: e76630. Published online 2022 Oct 18. doi: 10.7554/eLife.76630
PMCID:
PMC9683785
AbstractArticlePDF–6.8M
3.
Allosteric couplings upon binding of RfaH to transcription elongation complexes
José Alejandro Molina, Pablo Galaz-Davison, Elizabeth A Komives, Irina Artsimovitch, César A Ramírez-Sarmiento
Nucleic Acids Res. 2022 Jun 24; 50(11): 6384–6397. Published online 2022 Jun 7. doi: 10.1093/nar/gkac453
PMCID:
PMC9226497
AbstractArticlePDF–6.7M
4.
Origins and Molecular Evolution of the NusG Paralog RfaH
Bing Wang, Vadim M. Gumerov, Ekaterina P. Andrianova, Igor B. Zhulin, Irina Artsimovitch
mBio. 2020 Sep-Oct; 11(5): e02717-20. Published online 2020 Oct 27. doi: 10.1128/mBio.02717-20
PMCID:
PMC7593976
AbstractArticlePDF–4.7M
5.
The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand
Philipp K Zuber, Irina Artsimovitch, Monali NandyMazumdar, Zhaokun Liu, Yuri Nedialkov, Kristian Schweimer, Paul Rösch, Stefan H Knauer
eLife. 2018; 7: e36349. Published online 2018 May 9. doi: 10.7554/eLife.36349
PMCID:
PMC5995543
AbstractArticlePDF–3.6M
6.
Flipping states: a few key residues decide the winning conformation of the only universally conserved transcription factor
Da Shi, Dmitri Svetlov, Ruben Abagyan, Irina Artsimovitch
Nucleic Acids Res. 2017 Sep 6; 45(15): 8835–8843. Published online 2017 Jun 10. doi: 10.1093/nar/gkx523
PMCID:
PMC5587751
AbstractArticlePDF–2.3M
7.
Multiple Transcriptional Factors Regulate Transcription of the rpoE Gene in Escherichia coli under Different Growth Conditions and When the Lipopolysaccharide Biosynthesis Is Defective
Gracjana Klein, Anna Stupak, Daria Biernacka, Pawel Wojtkiewicz, Buko Lindner, Satish Raina
J Biol Chem. 2016 Oct 28; 291(44): 22999–23019. Published online 2016 Sep 14. doi: 10.1074/jbc.M116.748954
PMCID:
PMC5087721
AbstractArticlePDF–4.1M
8.
RfaH Suppresses Small RNA MicA Inhibition of fimB Expression in Escherichia coli K-12
Alexandra Moores, Saranna Chipper-Keating, Lei Sun, Gareth McVicker, Lynn Wales, Krishna Gashi, Ian C. Blomfield
J Bacteriol. 2014 Jan; 196(1): 148–156. doi: 10.1128/JB.00912-13
PMCID:
PMC3911127
AbstractArticlePDF–733K
9.
Interdomain contacts control folding of transcription factor RfaH
Sushil Kumar Tomar, Stefan H. Knauer, Monali NandyMazumdar, Paul Rösch, Irina Artsimovitch
Nucleic Acids Res. 2013 Dec; 41(22): 10077–10085. Published online 2013 Aug 29. doi: 10.1093/nar/gkt779
PMCID:
PMC3905879
AbstractArticlePDF–7.8M
10.
Antisense Oligonucleotide-stimulated Transcriptional Pausing Reveals RNA Exit Channel Specificity of RNA Polymerase and Mechanistic Contributions of NusA and RfaH
Kellie E. Kolb, Pyae P. Hein, Robert Landick
J Biol Chem. 2014 Jan 10; 289(2): 1151–1163. Published online 2013 Nov 25. doi: 10.1074/jbc.M113.521393
PMCID:
PMC3887182
AbstractArticlePDF–2.3M
11.
Transformation: The next level of regulation
Stefan H. Knauer, Paul Rösch, Irina Artsimovitch
RNA Biol. 2012 Dec 1; 9(12): 1418–1423. Published online 2012 Nov 6. doi: 10.4161/rna.22724
PMCID:
PMC3679274
AbstractArticlePDF–1.1M
12.
An α-helix to β-barrel domain switch transforms the transcription factor RfaH into a translationfactor
Björn M. Burmann, Stefan H. Knauer, Anastasia Sevostyanova, Kristian Schweimer, Rachel A. Mooney, Robert Landick, Irina Artsimovitch, Paul Rösch
Cell. Author manuscript; available in PMC 2013 Jul 20.
Published in final edited form as: Cell. 2012 Jul 20; 150(2): 291–303. doi: 10.1016/j.cell.2012.05.042
PMCID:
PMC3430373
AbstractArticlePDF–3.8M
13.
Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator
Georgiy A. Belogurov, Marina N. Vassylyeva, Vladimir Svetlov, Sergiy Klyuyev, Nick V. Grishin, Dmitry G. Vassylyev, Irina Artsimovitch
Mol Cell. Author manuscript; available in PMC 2011 Jun 16.
Published in final edited form as: Mol Cell. 2007 Apr 13; 26(1): 117–129. doi: 10.1016/j.molcel.2007.02.021
PMCID:
PMC3116145
AbstractArticlePDF–3.2M
14.
Functional regions of the N-terminal domain of the antiterminator RfaH
Georgiy A Belogurov, Anastasia Sevostyanova, Vladimir Svetlov, Irina Artsimovitch
Mol Microbiol. 2010 Apr; 76(2): 286–301. doi: 10.1111/j.1365-2958.2010.07056.x
PMCID:
PMC2871177
AbstractArticlePDF–1.1M
15.
Functional specialization of transcription elongation factors
Georgiy A Belogurov, Rachel A Mooney, Vladimir Svetlov, Robert Landick, Irina Artsimovitch
EMBO J. 2009 Jan 21; 28(2): 112–122. Published online 2008 Dec 18. doi: 10.1038/emboj.2008.268
PMCID:
PMC2634734
AbstractArticlePDF–469K
16.
Lipopolysaccharide Endotoxins
Christian R. H. Raetz, Chris Whitfield
Annu Rev Biochem. Author manuscript; available in PMC 2008 Oct 17.
Published in final edited form as: Annu Rev Biochem. 2002; 71: 635–700. Published online 2001 Nov 9. doi: 10.1146/annurev.biochem.71.110601.135414
PMCID:
PMC2569852
AbstractArticlePDF–4.2M
17.
Crystallization and preliminary crystallographic analysis of the transcriptional regulator RfaH from Escherichia coli and its complex with ops DNA
Marina N. Vassylyeva, Vladimir Svetlov, Sergiy Klyuyev, Yancho D. Devedjiev, Irina Artsimovitch, Dmitry G. Vassylyev
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Oct 1; 62(Pt 10): 1027–1030. Published online 2006 Sep 30. doi: 10.1107/S174430910603658X
PMCID:
PMC2225194
AbstractArticlePDF–288K
18.
Allosteric control of the RNA polymerase by the elongation factor RfaH
Vladimir Svetlov, Georgiy A. Belogurov, Elena Shabrova, Dmitry G. Vassylyev, Irina Artsimovitch
Nucleic Acids Res. 2007 Sep; 35(17): 5694–5705. Published online 2007 Aug 21. doi: 10.1093/nar/gkm600
PMCID:
PMC2034486
AbstractArticlePDF–15M
19.
Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12
Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui
J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06
PMCID:
PMC1797309
AbstractArticlePDF–141K
20.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K

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