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Select item 58509281.

The C-Terminus of Ribosomal Protein uS4 Contributes to Small Ribosomal Subunit Biogenesis and the Fidelity of Translation

Divya Kamath, Benjamin B. Allgeyer, Steven T Gregory, Margaret C. Bielski, David M. Roelofsz, Sharon L. Sabapathypillai, Nikhil Vaid, Michael O'Connor

Biochimie. Author manuscript; available in PMC 2018 Jul 1.

Published in final edited form as: Biochimie. 2017 Jul; 138: 194–201. Published online 2017 May 5. doi: 10.1016/j.biochi.2017.05.004

PMCID:: PMC5850928

Abstract Article PDF–1.6M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39680763.

Protein-guided RNA dynamics during early ribosome assembly

Hajin Kim, Sanjaya C. Abeysirigunawardena, Ke Chen, Megan Mayerle, Kaushik Ragunathan, Zaida Luthey-Schulten, Taekjip Ha, Sarah A. Woodson

Nature. Author manuscript; available in PMC 2014 Aug 20.

Published in final edited form as: Nature. 2014 Feb 20; 506(7488): 334–338. Published online 2014 Feb 12. doi: 10.1038/nature13039

PMCID:: PMC3968076

Abstract Article PDF–3.0M

Select item 32853554.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198

PMCID:: PMC3285355

Abstract Article PDF–1.2M

Select item 31677425.

Slow formation of stable complexes during coincubation of a minimal rRNA and ribosomal protein S4

Megan Mayerle, Deepti L. Bellur, Sarah A. Woodson

J Mol Biol. Author manuscript; available in PMC 2012 Sep 23.

Published in final edited form as: J Mol Biol. 2011 Sep 23; 412(3): 453–465. Published online 2011 Jul 29. doi: 10.1016/j.jmb.2011.07.048

PMCID:: PMC3167742

Abstract Article PDF–1.8M

Select item 29192096.

Structures of the ribosome in intermediate states of ratcheting

Wen Zhang, Jack Dunkle, Jamie H. D. Cate

Science. Author manuscript; available in PMC 2010 Aug 10.

Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275

PMCID:: PMC2919209

Abstract Article PDF–2.2M

Select item 27972897.

Ribosomal Protein S12 and Aminoglycoside Antibiotics Modulate A-site mRNA Cleavage and Transfer-Messenger RNA Activity in Escherichia coli

Laura E. Holberger, Christopher S. Hayes

J Biol Chem. 2009 Nov 13; 284(46): 32188–32200. Published online 2009 Sep 23. doi: 10.1074/jbc.M109.062745

PMCID:: PMC2797289

Abstract Article PDF–2.5M

Select item 27786118.

Regulation of the protein-conducting channel by a bound ribosome

James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten

Structure. Author manuscript; available in PMC 2010 Nov 11.

Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010

PMCID:: PMC2778611

Abstract Article PDF–3.1M

Select item 27631859.

Global stabilization of rRNA structure by ribosomal proteins S4, S17 and S20

Priya Ramaswamy, Sarah A. Woodson

J Mol Biol. Author manuscript; available in PMC 2010 Sep 25.

Published in final edited form as: J Mol Biol. 2009 Sep 25; 392(3): 666–677. Published online 2009 Jul 16. doi: 10.1016/j.jmb.2009.07.032

PMCID:: PMC2763185

Abstract Article PDF–3.4M

Select item 272079810.

Concurrent Nucleation of 16S Folding and Induced Fit in 30 S Ribosome Assembly

Tadepalli Adilakshmi, Deepti L. Bellur, Sarah A. Woodson

Nature. Author manuscript; available in PMC 2009 Oct 30.

Published in final edited form as: Nature. 2008 Oct 30; 455(7217): 1268–1272. Published online 2008 Sep 10. doi: 10.1038/nature07298

PMCID:: PMC2720798

Abstract Article PDF–1.0M

Select item 244881411.

Quantifying changes in the thiol redox proteome upon oxidative stress in vivo

Lars I. Leichert, Florian Gehrke, Harini V. Gudiseva, Tom Blackwell, Marianne Ilbert, Angela K. Walker, John R. Strahler, Philip C. Andrews, Ursula Jakob

Proc Natl Acad Sci U S A. 2008 Jun 17; 105(24): 8197–8202. Published online 2008 Feb 14. doi: 10.1073/pnas.0707723105

PMCID:: PMC2448814

Abstract Article PDF–628K

Select item 229217712.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 185580913.

Essentiality of Ribosomal and Transcription Antitermination Proteins Analyzed by Systematic Gene Replacement in Escherichia coli

Mikhail Bubunenko, Teresa Baker, Donald L. Court

J Bacteriol. 2007 Apr; 189(7): 2844–2853. Published online 2007 Feb 2. doi: 10.1128/JB.01713-06

PMCID:: PMC1855809

Abstract Article PDF–198K

Select item 168148214.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148115.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705216.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520017.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 52167118.

A novel GTPase activated by the small subunit of ribosome

Hyouta Himeno, Kyoko Hanawa-Suetsugu, Takatsugu Kimura, Kuniaki Takagi, Wakana Sugiyama, Shinobu Shirata, Tomoyuki Mikami, Fujiko Odagiri, Yukiko Osanai, Daisuke Watanabe, Simon Goto, Liliya Kalachnyuk, Chisato Ushida, Akira Muto

Nucleic Acids Res. 2004; 32(17): 5303–5309. Published online 2004 Oct 5. doi: 10.1093/nar/gkh861