PMC Links for GEO Profiles (Select 13673117) - PMC

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Items: 18

Select item 111360741.

The Nudix hydrolase superfamily

A. G. McLennan

Cell Mol Life Sci. 2006 Jan; 63(2): 123–143. Published online 2005 Dec 27. doi: 10.1007/s00018-005-5386-7

PMCID:: PMC11136074

Abstract Article PDF–173K

Select item 71449402.

Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH

Ang Gao, Nikita Vasilyev, Abhishek Kaushik, Wenqian Duan, Alexander Serganov

Nucleic Acids Res. 2020 Apr 17; 48(7): 3776–3788. Published online 2020 Jan 21. doi: 10.1093/nar/gkaa024

PMCID:: PMC7144940

Abstract Article PDF–3.1M

Select item 67311273.

Stresses that raise Np₄A levels induce protective nucleoside tetraphosphate capping of bacterial RNA

Daniel J. Luciano, Rose Levenson-Palmer, Joel G. Belasco

Mol Cell. Author manuscript; available in PMC 2020 Sep 5.

Published in final edited form as: Mol Cell. 2019 Sep 5; 75(5): 957–966.e8. Published online 2019 Jun 6. doi: 10.1016/j.molcel.2019.05.031

PMCID:: PMC6731127

Abstract Article PDF–995K

Select item 65271304.

Structural and mechanistic basis of the mammalian Nudt12 RNA deNADding

Ewa Grudzien-Nogalska, Yixuan Wu, Xinfu Jiao, Huijuan Cui, Maria K. Mateyak, Ronald P. Hart, Liang Tong, Megerditch Kiledjian

Nat Chem Biol. Author manuscript; available in PMC 2019 Nov 17.

Published in final edited form as: Nat Chem Biol. 2019 Jun; 15(6): 575–582. Published online 2019 May 17. doi: 10.1038/s41589-019-0293-7

PMCID:: PMC6527130

Abstract Article PDF–2.1M

Select item 61524315.

Importance of a diphosphorylated intermediate for RppH-dependent RNA degradation

Daniel J. Luciano, Nikita Vasilyev, Jamie Richards, Alexander Serganov, Joel G. Belasco

RNA Biol. 2018; 15(6): 703–706. Published online 2018 May 29. doi: 10.1080/15476286.2018.1460995

PMCID:: PMC6152431

Abstract Article PDF–528K

Select item 60618556.

Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF

Ang Gao, Nikita Vasilyev, Daniel J Luciano, Rose Levenson-Palmer, Jamie Richards, William M Marsiglia, Nathaniel J Traaseth, Joel G Belasco, Alexander Serganov

Nucleic Acids Res. 2018 Jul 27; 46(13): 6841–6856. Published online 2018 May 4. doi: 10.1093/nar/gky327

PMCID:: PMC6061855

Abstract Article PDF–7.0M

Select item 55425827.

A novel RNA phosphorylation state enables 5′-end-dependent degradation in Escherichia coli

Daniel J. Luciano, Nikita Vasilyev, Jamie Richards, Alexander Serganov, Joel G. Belasco

Mol Cell. Author manuscript; available in PMC 2018 Jul 6.

Published in final edited form as: Mol Cell. 2017 Jul 6; 67(1): 44–54.e6. Published online 2017 Jun 29. doi: 10.1016/j.molcel.2017.05.035

PMCID:: PMC5542582

Abstract Article PDF–1.5M

Select item 43922548.

Structures of RNA Complexes with the Escherichia coli RNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5′-End-dependent mRNA Decay

Nikita Vasilyev, Alexander Serganov

J Biol Chem. 2015 Apr 10; 290(15): 9487–9499. Published online 2015 Feb 5. doi: 10.1074/jbc.M114.634824

PMCID:: PMC4392254

Abstract Article PDF–3.9M

Select item 43922539.

Specificity and Evolutionary Conservation of the Escherichia coli RNA Pyrophosphohydrolase RppH

Patricia L. Foley, Ping-kun Hsieh, Daniel J. Luciano, Joel G. Belasco

J Biol Chem. 2015 Apr 10; 290(15): 9478–9486. Published online 2015 Feb 5. doi: 10.1074/jbc.M114.634659

PMCID:: PMC4392253

Abstract Article PDF–1.6M

Select item 422777410.

RppH-dependent pyrophosphohydrolysis of mRNAs is regulated by direct interaction with DapF in Escherichia coli

Chang-Ro Lee, Miri Kim, Young-Ha Park, Yeon-Ran Kim, Yeong-Jae Seok

Nucleic Acids Res. 2014 Nov 10; 42(20): 12746–12757. Published online 2014 Oct 13. doi: 10.1093/nar/gku926

PMCID:: PMC4227774

Abstract Article PDF–2.0M

Select item 412385511.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 219640512.

Initiation of RNA decay in Escherichia coli by 5’ pyrophosphate removal

Helena Celesnik, Atilio Deana, Joel G. Belasco

Mol Cell. Author manuscript; available in PMC 2008 Jul 6.

Published in final edited form as: Mol Cell. 2007 Jul 6; 27(1): 79–90. doi: 10.1016/j.molcel.2007.05.038

PMCID:: PMC2196405

Abstract Article PDF–1011K

Select item 185587413.

Identification of Novel Escherichia coli Ribosome-Associated Proteins Using Isobaric Tags and Multidimensional Protein Identification Techniques

M. Jiang, S. M. Sullivan, A. K. Walker, J. R. Strahler, P. C. Andrews, J. R. Maddock

J Bacteriol. 2007 May; 189(9): 3434–3444. Published online 2007 Mar 2. doi: 10.1128/JB.00090-07

PMCID:: PMC1855874

Abstract Article PDF–393K

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520015.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405