PMC Links for GEO Profiles (Select 137264) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84493944.

Diphthamide promotes TOR signaling by increasing the translation of proteins in the TORC1 pathway

Yugang Zhang, Zhewang Lin, Julia Zhu, Miao Wang, Hening Lin

Proc Natl Acad Sci U S A. 2021 Sep 14; 118(37): e2104577118. Published online 2021 Sep 10. doi: 10.1073/pnas.2104577118

PMCID:: PMC8449394

Abstract Article PDF–1.0M

Select item 62913665.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 62162776.

A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export

Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro

EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992

PMCID:: PMC6216277

Abstract Article PDF–1.7M

Select item 61936767.

Importance of diphthamide modified EF2 for translational accuracy and competitive cell growth in yeast

Harmen Hawer, Koray Ütkür, Meike Arend, Klaus Mayer, Lorenz Adrian, Ulrich Brinkmann, Raffael Schaffrath

PLoS One. 2018; 13(10): e0205870. Published online 2018 Oct 18. doi: 10.1371/journal.pone.0205870

PMCID:: PMC6193676

Abstract Article PDF–2.7M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 56618859.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025410.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 547377011.

Evolutionary Conservation and Emerging Functional Diversity of the Cytosolic Hsp70:J Protein Chaperone Network of Arabidopsis thaliana

Amit K. Verma, Danish Diwan, Sandeep Raut, Neha Dobriyal, Rebecca E. Brown, Vinita Gowda, Justin K. Hines, Chandan Sahi

G3 (Bethesda) 2017 Jun; 7(6): 1941–1954. Published online 2017 Apr 21. doi: 10.1534/g3.117.042291

PMCID:: PMC5473770

Abstract Article PDF–2.0M

Select item 504769312.

Systematic identification of genes involved in metabolic acid stress resistance in yeast and their potential as cancer targets

John J. Shin, Qurratulain Aftab, Pamela Austin, Jennifer A. McQueen, Tak Poon, Shu Chen Li, Barry P. Young, Calvin D. Roskelley, Christopher J. R. Loewen

Dis Model Mech. 2016 Sep 1; 9(9): 1039–1049. doi: 10.1242/dmm.023374

PMCID:: PMC5047693

Abstract Article

Select item 468929613.

Swa2, the yeast homolog of mammalian auxilin, is specifically required for the propagation of the prion variant [URE3‐1]

Elizabeth M. Troisi, Michael E. Rockman, Phil P. Nguyen, Emily E. Oliver, Justin K. Hines

Mol Microbiol. 2015 Sep; 97(5): 926–941. Published online 2015 Jun 25. doi: 10.1111/mmi.13076

PMCID:: PMC4689296

Abstract Article PDF–4.2M

Select item 459300014.

Genetic Networks Required to Coordinate Chromosome Replication by DNA Polymerases α, δ, and ε in Saccharomyces cerevisiae

Marion Dubarry, Conor Lawless, A. Peter Banks, Simon Cockell, David Lydall

G3 (Bethesda) 2015 Oct; 5(10): 2187–2197. Published online 2015 Aug 21. doi: 10.1534/g3.115.021493

PMCID:: PMC4593000

Abstract Article PDF–1.8M

Select item 435814115.

Differential Phosphorylation of a Regulatory Subunit of Protein Kinase CK2 by Target of Rapamycin Complex 1 Signaling and the Cdc-like Kinase Kns1

Manuel E. Sanchez-Casalongue, Jaehoon Lee, Aviva Diamond, Scott Shuldiner, Robyn D. Moir, Ian M. Willis

J Biol Chem. 2015 Mar 13; 290(11): 7221–7233. Published online 2015 Jan 28. doi: 10.1074/jbc.M114.626523

PMCID:: PMC4358141

Abstract Article PDF–2.1M

Select item 426765516.

Brr2p carboxy-terminal Sec63 domain modulates Prp16 splicing RNA helicase

Olivier Cordin, Daniela Hahn, Ross Alexander, Amit Gautam, Cosmin Saveanu, J. David Barrass, Jean D. Beggs

Nucleic Acids Res. 2014 Dec 16; 42(22): 13897–13910. Published online 2014 Nov 26. doi: 10.1093/nar/gku1238

PMCID:: PMC4267655

Abstract Article PDF–4.7M

Select item 379155517.

Quantitative analysis of chaperone network throughput in budding yeast

Philip Brownridge, Craig Lawless, Aishwarya B Payapilly, Karin Lanthaler, Stephen W Holman, Victoria M Harman, Christopher M Grant, Robert J Beynon, Simon J Hubbard

Proteomics. 2013 Apr; 13(8): 1276–1291. Published online 2013 Mar 15. doi: 10.1002/pmic.201200412

PMCID:: PMC3791555

Abstract Article PDF–1.0M

Select item 358513018.

The Amidation Step of Diphthamide Biosynthesis in Yeast Requires DPH6, a Gene Identified through Mining the DPH1-DPH5 Interaction Network

Shanow Uthman, Christian Bär, Viktor Scheidt, Shihui Liu, Sara ten Have, Flaviano Giorgini, Michael J. R. Stark, Raffael Schaffrath

PLoS Genet. 2013 Feb; 9(2): e1003334. Published online 2013 Feb 28. doi: 10.1371/journal.pgen.1003334

PMCID:: PMC3585130

Abstract Article PDF–1.9M

Select item 356498719.

Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork

Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter

G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754

PMCID:: PMC3564987

Abstract Article PDF–2.3M

Select item 346374020.

Synthetic lethal interactions in yeast reveal functional roles of J protein co-chaperones

Anne Gillies, Rebecca Taylor, Jason E. Gestwicki

Mol Biosyst. Author manuscript; available in PMC 2013 Nov 1.

Published in final edited form as: Mol Biosyst. 2012 Nov; 8(11): 2901–2908. doi: 10.1039/c2mb25248a

PMCID:: PMC3463740

Abstract Article PDF–1.9M

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