PMC Links for GEO Profiles (Select 139223) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 82048604.

Structural basis of TRAPPIII‐mediated Rab1 activation

Aaron MN Joiner, Ben P Phillips, Kumar Yugandhar, Ethan J Sanford, Marcus B Smolka, Haiyuan Yu, Elizabeth A Miller, J Christopher Fromme

EMBO J. 2021 Jun 15; 40(12): e107607. Published online 2021 May 21. doi: 10.15252/embj.2020107607

PMCID:: PMC8204860

Abstract Article PDF–4.7M

Select item 77187515.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 63249386.

A steric gating mechanism dictates the substrate specificity of a Rab-GEF

Laura L. Thomas, Solveig A. van der Vegt, J. Christopher Fromme

Dev Cell. Author manuscript; available in PMC 2020 Jan 7.

Published in final edited form as: Dev Cell. 2019 Jan 7; 48(1): 100–114.e9. Published online 2018 Dec 6. doi: 10.1016/j.devcel.2018.11.013

PMCID:: PMC6324938

Abstract Article PDF–2.9M

Select item 59225287.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319

PMCID:: PMC5922528

Abstract Article PDF–7.1M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 57489849.

The TRAPPIII complex activates the GTPase Ypt1 (Rab1) in the secretory pathway

Laura L. Thomas, Aaron M.N. Joiner, J. Christopher Fromme

J Cell Biol. 2018 Jan 2; 217(1): 283–298. doi: 10.1083/jcb.201705214

PMCID:: PMC5748984

Abstract Article PDF–2.7M

Select item 566188510.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 511994211.

GTPase cross talk regulates TRAPPII activation of Rab11 homologues during vesicle biogenesis

Laura L. Thomas, J. Christopher Fromme

J Cell Biol. 2016 Nov 21; 215(4): 499–513. doi: 10.1083/jcb.201608123

PMCID:: PMC5119942

Abstract Article PDF–2.8M

Select item 510584512.

Trs33-Containing TRAPP IV: A Novel Autophagy-Specific Ypt1 GEF

Zhanna Lipatova, Uddalak Majumdar, Nava Segev

Genetics. 2016 Nov; 204(3): 1117–1128. Published online 2016 Sep 26. doi: 10.1534/genetics.116.194910

PMCID:: PMC5105845

Abstract Article PDF–2.8M

Select item 464965013.

Complementation of Yeast Genes with Human Genes as an Experimental Platform for Functional Testing of Human Genetic Variants

Akil Hamza, Erik Tammpere, Megan Kofoed, Christelle Keong, Jennifer Chiang, Guri Giaever, Corey Nislow, Philip Hieter

Genetics. 2015 Nov; 201(3): 1263–1274. Published online 2015 Sep 9. doi: 10.1534/genetics.115.181099

PMCID:: PMC4649650

Abstract Article PDF–6.2M

Select item 394597014.

Trs20 is required for TRAPP III complex assembly at the PAS and its function in autophagy

David Taussig, Zhanna Lipatova, Nava Segev

Traffic. Author manuscript; available in PMC 2015 Mar 1.

Published in final edited form as: Traffic. 2014 Mar; 15(3): 327–337. Published online 2014 Jan 14. doi: 10.1111/tra.12145

PMCID:: PMC3945970

Abstract Article PDF–2.5M

Select item 384517215.

The EM structure of the TRAPPIII complex leads to the identification of a requirement for COPII vesicles on the macroautophagy pathway

Dongyan Tan, Yiying Cai, Juan Wang, Jinzhong Zhang, Shekar Menon, Hui-Ting Chou, Susan Ferro-Novick, Karin M. Reinisch, Thomas Walz

Proc Natl Acad Sci U S A. 2013 Nov 26; 110(48): 19432–19437. Published online 2013 Nov 11. doi: 10.1073/pnas.1316356110

PMCID:: PMC3845172

Abstract Article PDF–1.0M

Select item 368375616.

Ypt1 recruits the Atg1 kinase to the preautophagosomal structure

Juan Wang, Shekar Menon, Akinori Yamasaki, Hui-Ting Chou, Thomas Walz, Yu Jiang, Susan Ferro-Novick

Proc Natl Acad Sci U S A. 2013 Jun 11; 110(24): 9800–9805. Published online 2013 May 28. doi: 10.1073/pnas.1302337110

PMCID:: PMC3683756

Abstract Article PDF–789K

Select item 366043417.

Trs20 is Required for TRAPP II Assembly

David Taussig, Zhanna Lipatova, Jane Kim, XuiQi Zhang, Nava Segev

Traffic. Author manuscript; available in PMC 2014 Jun 1.

Published in final edited form as: Traffic. 2013 Jun; 14(6): 678–690. Published online 2013 Mar 25. doi: 10.1111/tra.12065

PMCID:: PMC3660434

Abstract Article PDF–6.2M

Select item 356498718.

Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork

Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter

G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754

PMCID:: PMC3564987

Abstract Article PDF–2.3M

Select item 335597319.

The SMS domain of Trs23p is responsible for the in vitro appearance of the TRAPP I complex in Saccharomyces cerevisiae

Stephanie Brunet, Baraa Noueihed, Nassim Shahrzad, Djenann Saint-Dic, Benedeta Hasaj, Tian Lai Guan, Adrian Moores, Charles Barlowe, Michael Sacher

Cell Logist. 2012 Jan 1; 2(1): 28–42. Published online 2012 Jan 1. doi: 10.4161/cl.19414

PMCID:: PMC3355973

Abstract Article PDF–4.3M

Select item 328593320.

La-motif–dependent mRNA association with Slf1 promotes copper detoxification in yeast

Luca Schenk, Dominik M. Meinel, Katja Strässer, André P. Gerber

RNA. 2012 Mar; 18(3): 449–461. doi: 10.1261/rna.028506.111

PMCID:: PMC3285933

Abstract Article PDF–812K

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