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Items: 1 to 20 of 24

1.
Structural and mechanistic insights into ribosomal ITS2 RNA processing by nuclease-kinase machinery
Jiyun Chen, Hong Chen, Shanshan Li, Xiaofeng Lin, Rong Hu, Kaiming Zhang, Liang Liu
eLife. 2024; 12: RP86847. Published online 2024 Jan 5. doi: 10.7554/eLife.86847
PMCID:
PMC10942766
AbstractArticlePDF–8.9M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
Yeast ribosome biogenesis factors Puf6 and Nog2 and ribosomal proteins uL2 and eL43 act in concert to facilitate the release of nascent large ribosomal subunits from the nucleolus
Amber J LaPeruta, Stefanie Hedayati, Jelena Micic, Fiona Fitzgerald, David Kim, Grace Oualline, John L Woolford
Nucleic Acids Res. 2023 Nov 10; 51(20): 11277–11290. Published online 2023 Oct 9. doi: 10.1093/nar/gkad794
PMCID:
PMC10639061
AbstractArticlePDF–3.7M
5.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
A termination-independent role of Rat1 in cotranscriptional splicing
Zuzer Dhoondia, Hesham Elewa, Marva Malik, Zahidur Arif, Roger Pique-Regi, Athar Ansari
Nucleic Acids Res. 2021 Jun 4; 49(10): 5520–5536. Published online 2021 May 12. doi: 10.1093/nar/gkab339
PMCID:
PMC8191773
AbstractArticlePDF–6.5M
8.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
9.
It takes two (Las1 HEPN endoribonuclease domains) to cut RNA correctly
Monica C. Pillon, Kevin H. Goslen, Jacob Gordon, Melissa L. Wells, Jason G. Williams, Robin E. Stanley
J Biol Chem. 2020 May 1; 295(18): 5857–5870. Published online 2020 Mar 27. doi: 10.1074/jbc.RA119.011193
PMCID:
PMC7196650
AbstractArticlePDF–3.2M
10.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
AbstractArticlePDF–424K
11.
Characterization of the molecular crosstalk within the essential Grc3/Las1 pre-rRNA processing complex
Monica C. Pillon, Mack Sobhany, Robin E. Stanley
RNA. 2018 May; 24(5): 721–738. doi: 10.1261/rna.065037.117
PMCID:
PMC5900568
AbstractArticlePDF–5.5M
12.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
13.
Grc3 programs the essential endoribonuclease Las1 for specific RNA cleavage
Monica C. Pillon, Mack Sobhany, Mario J. Borgnia, Jason G. Williams, Robin E. Stanley
Proc Natl Acad Sci U S A. 2017 Jul 11; 114(28): E5530–E5538. Published online 2017 Jun 26. doi: 10.1073/pnas.1703133114
PMCID:
PMC5514736
AbstractArticlePDF–1.8M
14.
A protein interaction map of the LSU processome
Kathleen L. McCann, J. Michael Charette, Nicholas G. Vincent, Susan J. Baserga
Genes Dev. 2015 Apr 15; 29(8): 862–875. doi: 10.1101/gad.256370.114
PMCID:
PMC4403261
AbstractArticlePDF–848K
15.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
16.
Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae
Christopher D. Castle, Richa Sardana, Varada Dandekar, Victoria Borgianini, Arlen W. Johnson, Catherine Denicourt
Nucleic Acids Res. 2013 Jan; 41(2): 1135–1150. Published online 2012 Nov 21. doi: 10.1093/nar/gks1086
PMCID:
PMC3553937
AbstractArticlePDF–3.2M
17.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
18.
The Evolutionarily Conserved Protein LAS1 Is Required for Pre-rRNA Processing at Both Ends of ITS2
Stéphanie Schillewaert, Ludivine Wacheul, Frédéric Lhomme, Denis L. J. Lafontaine
Mol Cell Biol. 2012 Jan; 32(2): 430–444. doi: 10.1128/MCB.06019-11
PMCID:
PMC3255765
AbstractArticlePDF–3.0M
19.
Role of the RNA/DNA kinase Grc3 in transcription termination by RNA polymerase I
Priscilla Braglia, Katrin Heindl, Alexander Schleiffer, Javier Martinez, Nick J Proudfoot
EMBO Rep. 2010 Oct; 11(10): 758–764. Published online 2010 Sep 3. doi: 10.1038/embor.2010.130
PMCID:
PMC2948184
AbstractArticlePDF–742K
20.
An atlas of chaperone–protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell
Yunchen Gong, Yoshito Kakihara, Nevan Krogan, Jack Greenblatt, Andrew Emili, Zhaolei Zhang, Walid A Houry
Mol Syst Biol. 2009; 5: 275. Published online 2009 Jun 16. doi: 10.1038/msb.2009.26
PMCID:
PMC2710862
AbstractArticlePDF–3.2M

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