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Select item 101655411.

Systematic analysis of YFP traps reveals common mRNA/protein discordance in neural tissues

Joshua S. Titlow, Maria Kiourlappou, Ana Palanca, Jeffrey Y. Lee, Dalia S. Gala, Darragh Ennis, Joyce J.S. Yu, Florence L. Young, David Miguel Susano Pinto, Sam Garforth, Helena S. Francis, Finn Strivens, Hugh Mulvey, Alex Dallman-Porter, Staci Thornton, Diana Arman, Marissa J. Millard, Aino I. Järvelin, Mary Kay Thompson, Martin Sargent, Ilias Kounatidis, Richard M. Parton, Stephen Taylor, Ilan Davis

J Cell Biol. 2023 Jun 5; 222(6): e202205129. Published online 2023 May 5. doi: 10.1083/jcb.202205129

PMCID:: PMC10165541

Abstract Article PDF–8.4M

Select item 69615782.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 66363563.

The RNA-binding ATPase, Armitage, Couples piRNA Amplification in Nuage to Phased piRNA Production on Mitochondria

Daniel Tianfang Ge, Wei Wang, Cindy Tipping, Ildar Gainetdinov, Zhiping Weng, Phillip D. Zamore

Mol Cell. Author manuscript; available in PMC 2020 Jun 6.

Published in final edited form as: Mol Cell. 2019 Jun 6; 74(5): 982–995.e6. Published online 2019 May 7. doi: 10.1016/j.molcel.2019.04.006

PMCID:: PMC6636356

Abstract Article PDF–1.4M

Select item 65086214.

Satellite DNA-containing gigantic introns in a unique gene expression program during Drosophila spermatogenesis

Jaclyn M. Fingerhut, Jessica V. Moran, Yukiko M. Yamashita

PLoS Genet. 2019 May; 15(5): e1008028. Published online 2019 May 9. doi: 10.1371/journal.pgen.1008028

PMCID:: PMC6508621

Abstract Article PDF–5.0M

Select item 59197385.

Direct Testing for Allele-Specific Expression Differences Between Conditions

Luis León-Novelo, Alison R. Gerken, Rita M. Graze, Lauren M. McIntyre, Fabio Marroni

G3 (Bethesda) 2018 Feb; 8(2): 447–460. Published online 2017 Nov 22. doi: 10.1534/g3.117.300139

PMCID:: PMC5919738

Abstract Article PDF–2.2M

Select item 58871506.

RNA-Interference Pathways Display High Rates of Adaptive Protein Evolution in Multiple Invertebrates

William H. Palmer, Jarrod D. Hadfield, Darren J. Obbard

Genetics. 2018 Apr; 208(4): 1585–1599. Published online 2018 Feb 1. doi: 10.1534/genetics.117.300567

PMCID:: PMC5887150

Abstract Article PDF–1.7M

Select item 57078057.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890028.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 54875339.

Silencing of Transposable Elements by piRNAs in Drosophila: An Evolutionary Perspective

Shiqi Luo, Jian Lu

Genomics Proteomics Bioinformatics. 2017 Jun; 15(3): 164–176. Published online 2017 Jun 8. doi: 10.1016/j.gpb.2017.01.006

PMCID:: PMC5487533

Abstract Article PDF–1.2M

Select item 545876010.

The LOTUS domain is a conserved DEAD-box RNA helicase regulator essential for the recruitment of Vasa to the germ plasm and nuage

Mandy Jeske, Christoph W. Müller, Anne Ephrussi

Genes Dev. 2017 May 1; 31(9): 939–952. doi: 10.1101/gad.297051.117

PMCID:: PMC5458760

Abstract Article PDF–618K

Select item 545497711.

dFmr1 Plays Roles in Small RNA Pathways of Drosophila melanogaster

Valeria Specchia, Simona D’Attis, Antonietta Puricella, Maria Pia Bozzetti

Int J Mol Sci. 2017 May; 18(5): 1066. Published online 2017 May 16. doi: 10.3390/ijms18051066

PMCID:: PMC5454977

Abstract Article PDF–1.9M

Select item 512686412.

Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster

Punita Juneja, Andrew Quinn, Francis M. Jiggins

BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7

PMCID:: PMC5126864

Abstract Article PDF–1.1M

Select item 457928913.

Gene expression profiling of brakeless mutant Drosophila embryos

Filip Crona, Bhumica Singla, Mattias Mannervik

Data Brief. 2015 Dec; 5: 134–137. Published online 2015 Sep 5. doi: 10.1016/j.dib.2015.08.033

PMCID:: PMC4579289

Abstract Article PDF–284K

Select item 456802514.

Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions

Albert J. Erives

Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1

PMCID:: PMC4568025

Abstract Article PDF–2.8M

Select item 452833015.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832916.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288717.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114