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Items: 1 to 20 of 79

1.
Transcriptome analysis reveals temporally regulated genetic networks during Drosophila border cell collective migration
Emily Burghardt, Jessica Rakijas, Antariksh Tyagi, Pralay Majumder, Bradley J.S.C. Olson, Jocelyn A. McDonald
BMC Genomics. 2023; 24: 728. Published online 2023 Dec 1. doi: 10.1186/s12864-023-09839-8
PMCID:
PMC10693066
AbstractArticlePDF–12M
2.
Developmentally regulated alternate 3′ end cleavage of nascent transcripts controls dynamic changes in protein expression in an adult stem cell lineage
Cameron W. Berry, Gonzalo H. Olivares, Lorenzo Gallicchio, Gokul Ramaswami, Alvaro Glavic, Patricio Olguín, Jin Billy Li, Margaret T. Fuller
Genes Dev. 2022 Aug 1; 36(15-16): 916–935. doi: 10.1101/gad.349689.122
PMCID:
PMC9575692
AbstractArticlePDF–14M
3.
A Candidate RNAi Screen Reveals Diverse RNA-Binding Protein Phenotypes in Drosophila Flight Muscle
Shao-Yen Kao, Elena Nikonova, Sabrina Chaabane, Albiona Sabani, Alexandra Martitz, Anja Wittner, Jakob Heemken, Tobias Straub, Maria L. Spletter
Cells. 2021 Oct; 10(10): 2505. Published online 2021 Sep 22. doi: 10.3390/cells10102505
PMCID:
PMC8534295
AbstractArticlePDF–9.7M
4.
Identification of novel regulators of dendrite arborization using cell type-specific RNA metabolic labeling
Mohamed Y. Aboukilila, Josephine D. Sami, Jingtian Wang, Whitney England, Robert C. Spitale, Michael D. Cleary
PLoS One. 2020; 15(12): e0240386. Published online 2020 Dec 2. doi: 10.1371/journal.pone.0240386
PMCID:
PMC7710095
AbstractArticlePDF–1.6M
5.
Functional Transcription Factor Target Networks Illuminate Control of Epithelial Remodelling
Ian M. Overton, Andrew H. Sims, Jeremy A. Owen, Bret S. E. Heale, Matthew J. Ford, Alexander L. R. Lubbock, Erola Pairo-Castineira, Abdelkader Essafi
Cancers (Basel) 2020 Oct; 12(10): 2823. Published online 2020 Sep 30. doi: 10.3390/cancers12102823
PMCID:
PMC7652213
AbstractArticlePDF–2.5M
6.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
7.
Dystrophin Is Required for Appropriate Retrograde Control of Neurotransmitter Release at the Drosophila Neuromuscular Junction
Mariska C. van der Plas, Gonneke S. K. Pilgram, Jaap J. Plomp, Anja de Jong, Lee G. Fradkin, Jasprina N. Noordermeer
J Neurosci. 2006 Jan 4; 26(1): 333–344. doi: 10.1523/JNEUROSCI.4069-05.2006
PMCID:
PMC6674336
AbstractArticlePDF–614K
8.
Rationally-engineered reproductive barriers using CRISPR & CRISPRa: an evaluation of the synthetic species concept in Drosophila melanogaster
Andrew J. Waters, Paolo Capriotti, David C. A. Gaboriau, Philippos Aris Papathanos, Nikolai Windbichler
Sci Rep. 2018; 8: 13125. Published online 2018 Sep 3. doi: 10.1038/s41598-018-31433-2
PMCID:
PMC6120925
AbstractArticlePDF–3.8M
9.
Hrp48 and eIF3d contribute to msl-2 mRNA translational repression
Emilia Szostak, Marina García-Beyaert, Tanit Guitart, Antoine Graindorge, Olga Coll, Fátima Gebauer
Nucleic Acids Res. 2018 May 4; 46(8): 4099–4113. Published online 2018 Apr 4. doi: 10.1093/nar/gky246
PMCID:
PMC5934621
AbstractArticlePDF–4.6M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes
Dina Hafez, Aslihan Karabacak, Sabrina Krueger, Yih-Chii Hwang, Li-San Wang, Robert P. Zinzen, Uwe Ohler
Genome Biol. 2017; 18: 199. Published online 2017 Oct 26. doi: 10.1186/s13059-017-1316-x
PMCID:
PMC5657048
AbstractArticlePDF–2.7M
13.
Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis
Nina Koenecke, Jeff Johnston, Bjoern Gaertner, Malini Natarajan, Julia Zeitlinger
Genome Biol. 2016; 17: 196. Published online 2016 Sep 27. doi: 10.1186/s13059-016-1057-2
PMCID:
PMC5037609
AbstractArticlePDF–2.2M
14.
Poly(ADP-Ribosyl)ation of hnRNP A1 Protein Controls Translational Repression in Drosophila
Yingbiao Ji, Alexei V. Tulin
Mol Cell Biol. 2016 Oct 1; 36(19): 2476–2486. Prepublished online 2016 Jul 11. Published online 2016 Sep 12. doi: 10.1128/MCB.00207-16
PMCID:
PMC5021380
AbstractArticlePDF–2.0M
15.
Data Integration for Microarrays: Enhanced Inference for Gene Regulatory Networks
Alina Sîrbu, Martin Crane, Heather J. Ruskin
Microarrays (Basel) 2015 Jun; 4(2): 255–269. Published online 2015 May 14. doi: 10.3390/microarrays4020255
PMCID:
PMC4996389
AbstractArticlePDF–129K
16.
The Insulator Protein Suppressor of Hairy Wing Is Required for Proper Ring Canal Development During Oogenesis in Drosophila
Shih-Jui Hsu, Maria P. Plata, Ben Ernest, Saghi Asgarifar, Mariano Labrador
Dev Biol. Author manuscript; available in PMC 2016 Aug 11.
Published in final edited form as: Dev Biol. 2015 Jul 1; 403(1): 57–68. Published online 2015 Apr 14. doi: 10.1016/j.ydbio.2015.03.024
PMCID:
PMC4981481
AbstractArticlePDF–1.1M
17.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
18.
E2F function in muscle growth is necessary and sufficient for viability in Drosophila
Maria Paula Zappia, Maxim V. Frolov
Nat Commun. 2016; 7: 10509. Published online 2016 Jan 29. doi: 10.1038/ncomms10509
PMCID:
PMC4740182
AbstractArticlePDF–4.6M
19.
The genetic basis of natural variation in mushroom body size in Drosophila melanogaster
Liesbeth Zwarts, Lies Vanden Broeck, Elisa Cappuyns, Julien F. Ayroles, Michael M. Magwire, Veerle Vulsteke, Jason Clements, Trudy F. C. Mackay, Patrick Callaerts
Nat Commun. 2015; 6: 10115. Published online 2015 Dec 11. doi: 10.1038/ncomms10115
PMCID:
PMC4682101
AbstractArticlePDF–2.0M
20.
SUMO-Enriched Proteome for Drosophila Innate Immune Response
Mithila Handu, Bhagyashree Kaduskar, Ramya Ravindranathan, Amarendranath Soory, Ritika Giri, Vijay Barathi Elango, Harsha Gowda, Girish S. Ratnaparkhi
G3 (Bethesda) 2015 Oct; 5(10): 2137–2154. Published online 2015 Aug 18. doi: 10.1534/g3.115.020958
PMCID:
PMC4592996
AbstractArticlePDF–2.0M

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