PMC Links for GEO Profiles (Select 14982838) - PMC

Michal Hammel, Dhar Amlanjyoti, Francis E. Reyes, Jian-Hua Chen, Rochelle Parpana, Henry Y. H. Tang, Carolyn A. Larabell, John A. Tainer, Sankar Adhya

Sci Adv. 2016 Jul; 2(7): e1600650. Published online 2016 Jul 29. doi: 10.1126/sciadv.1600650

PMCID:: PMC4966879

Abstract Article PDF–4.2M

Select item 41238555.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 33338576.

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

Ana I. Prieto, Christina Kahramanoglou, Ruhi M. Ali, Gillian M. Fraser, Aswin S. N. Seshasayee, Nicholas M. Luscombe

Nucleic Acids Res. 2012 Apr; 40(8): 3524–3537. Published online 2011 Dec 16. doi: 10.1093/nar/gkr1236

PMCID:: PMC3333857

Abstract Article PDF–3.2M

Select item 31155087.

Nonspecific DNA Binding and Bending by HU_αβ: Interfaces of the Three Binding Modes Characterized by Salt Dependent Thermodynamics

Junseock Koh, Irina Shkel, Ruth M. Saecker, M. Thomas Record, Jr.

J Mol Biol. Author manuscript; available in PMC 2012 Jul 8.

Published in final edited form as: J Mol Biol. 2011 Jul 8; 410(2): 241–267. Published online 2011 Apr 12. doi: 10.1016/j.jmb.2011.04.001

PMCID:: PMC3115508

Abstract Article PDF–1.8M

Select item 26795858.

Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte-Carlo simulations

Luke Czapla, David Swigon, Wilma K. Olson

J Mol Biol. Author manuscript; available in PMC 2009 May 8.

Published in final edited form as: J Mol Biol. 2008 Oct 3; 382(2): 353–370. Published online 2008 Jun 19. doi: 10.1016/j.jmb.2008.05.088

PMCID:: PMC2679585

Abstract Article PDF–2.8M

Select item 26556589.

DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes

Matej Butala, Stephen J. W. Busby, David J. Lee

Nucleic Acids Res. 2009 Apr; 37(5): e37. Published online 2009 Jan 30. doi: 10.1093/nar/gkp043

PMCID:: PMC2655658

Abstract Article PDF–4.3M

Select item 264978310.

DNA Binding Mode Transitions of Escherichia coli HU_αβ: Evidence for Formation of a Bent DNA – Protein Complex on Intact, Linear Duplex DNA

Junseock Koh, Ruth M. Saecker, M. Thomas Record, Jr.

J Mol Biol. Author manuscript; available in PMC 2009 Nov 7.

Published in final edited form as: J Mol Biol. 2008 Nov 7; 383(2): 324–346. Published online 2008 Jul 16. doi: 10.1016/j.jmb.2008.07.024

PMCID:: PMC2649783

Abstract Article PDF–2.0M

Select item 263474111.

The HU Regulon Is Composed of Genes Responding to Anaerobiosis, Acid Stress, High Osmolarity and SOS Induction

Jacques Oberto, Sabrina Nabti, Valérie Jooste, Hervé Mignot, Josette Rouviere-Yaniv

PLoS One. 2009; 4(2): e4367. Published online 2009 Feb 4. doi: 10.1371/journal.pone.0004367

PMCID:: PMC2634741

Abstract Article PDF–2.4M

Select item 247564012.

Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation

Nicole A. Becker, Jason D. Kahn, L. James Maher, III

Nucleic Acids Res. 2008 Jul; 36(12): 4009–4021. Published online 2008 May 31. doi: 10.1093/nar/gkn353

PMCID:: PMC2475640

Abstract Article PDF–1.4M

Select item 229217713.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 228002014.

The HU–DNA binding interaction probed with UV resonance Raman spectroscopy: Structural elements of specificity

Kristi Wojtuszewski, Ishita Mukerji

Protein Sci. 2004 Sep; 13(9): 2416–2428. doi: 10.1110/ps.04730204

PMCID:: PMC2280020

Abstract Article PDF–276K

Select item 224189015.

HU binds and folds single-stranded DNA

Dmitri Kamashev, Anna Balandina, Alexey K. Mazur, Paola B. Arimondo, Josette Rouviere-Yaniv

Nucleic Acids Res. 2008 Feb; 36(3): 1026–1036. Published online 2007 Dec 20. doi: 10.1093/nar/gkm667

PMCID:: PMC2241890

Abstract Article PDF–6.0M

Select item 203463816.

The Escherichia coli Histone-like Protein HU Has a Role in Stationary Phase Adaptive Mutation

Ashley B. Williams, Patricia L. Foster

Genetics. 2007 Oct; 177(2): 723–735. doi: 10.1534/genetics.107.075861

PMCID:: PMC2034638

Abstract Article PDF–533K

Select item 191947317.

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli

Nicole A. Becker, Jason D. Kahn, L. James Maher, III

Nucleic Acids Res. 2007 Jun; 35(12): 3988–4000. Published online 2007 Jun 6. doi: 10.1093/nar/gkm419

PMCID:: PMC1919473

Abstract Article PDF–862K

Select item 183859818.

Spiral structure of Escherichia coli HUαβ provides foundation for DNA supercoiling

Fusheng Guo, Sankar Adhya

Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11): 4309–4314. Published online 2007 Mar 5. doi: 10.1073/pnas.0611686104

PMCID:: PMC1838598

Abstract Article PDF–2.1M

Select item 180795419.

Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines

Tumpa Sarkar, Iulia Vitoc, Ishita Mukerji, Nicholas V. Hud

Nucleic Acids Res. 2007 Feb; 35(3): 951–961. Published online 2007 Jan 26. doi: 10.1093/nar/gkl1093

PMCID:: PMC1807954

Abstract Article PDF–1.6M

Select item 168148120.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049