PMC Links for GEO Profiles (Select 1554667) - PMC

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 76698214.

The ATF3 Transcription Factor Is a Short-Lived Substrate of the Arg/N-Degron Pathway

Tri T. M. Vu, Alexander Varshavsky

Biochemistry. Author manuscript; available in PMC 2020 Nov 17.

Published in final edited form as: Biochemistry. 2020 Aug 4; 59(30): 2796–2812. Published online 2020 Jul 21. doi: 10.1021/acs.biochem.0c00514

PMCID:: PMC7669821

Abstract Article PDF–1.9M

Select item 35724105.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 33908586.

The N-end rule pathway counteracts cell death by destroying proapoptotic protein fragments

Konstantin I. Piatkov, Christopher S. Brower, Alexander Varshavsky

Proc Natl Acad Sci U S A. 2012 Jul 3; 109(27): E1839–E1847. Published online 2012 Jun 5. doi: 10.1073/pnas.1207786109

PMCID:: PMC3390858

Abstract Article PDF–1.7M

Select item 31780597.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 31514878.

Alternative Ubiquitin Activation/Conjugation Cascades Interact with N-end rule Ubiquitin Ligases to Control Degradation of RGS Proteins

Peter C.W. Lee, Mathew E. Sowa, Steven P. Gygi, J. Wade Harper

Mol Cell. Author manuscript; available in PMC 2012 Aug 5.

Published in final edited form as: Mol Cell. 2011 Aug 5; 43(3): 392–405. doi: 10.1016/j.molcel.2011.05.034

PMCID:: PMC3151487

Abstract Article PDF–2.6M

Select item 30225349.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 261552010.

The Substrate Recognition Domains of the N-end Rule Pathway

Takafumi Tasaki, Adriana Zakrzewska, Drew D. Dudgeon, Yonghua Jiang, John S. Lazo, Yong Tae Kwon

J Biol Chem. 2009 Jan 16; 284(3): 1884–1895. doi: 10.1074/jbc.M803641200

PMCID:: PMC2615520

Abstract Article PDF–1.0M

Select item 252899611.

Roles of STAT3/SOCS3 Pathway in Regulating the Visual Function and Ubiquitin-Proteasome-dependent Degradation of Rhodopsin during Retinal Inflammation

Yoko Ozawa, Keiko Nakao, Toshihide Kurihara, Takuya Shimazaki, Shigeto Shimmura, Susumu Ishida, Akihiko Yoshimura, Kazuo Tsubota, Hideyuki Okano

J Biol Chem. 2008 Sep 5; 283(36): 24561–24570. doi: 10.1074/jbc.M802238200

PMCID:: PMC2528996

Abstract Article PDF–516K

Select item 222416612.

Synthetic heterovalent inhibitors targeting recognition E3 components of the N-end rule pathway

Min Jae Lee, Krishnendu Pal, Takafumi Tasaki, Sayantani Roy, Yonghua Jiang, Jee Young An, Rajkumar Banerjee, Yong Tae Kwon

Proc Natl Acad Sci U S A. 2008 Jan 8; 105(1): 100–105. Published online 2007 Dec 27. doi: 10.1073/pnas.0708465105

PMCID:: PMC2224166

Abstract Article PDF–1.2M

Select item 148269913.

Genome-wide isolation of growth and obesity QTL using mouse speed congenic strains

Charles R Farber, Pablo M Corva, Juan F Medrano

BMC Genomics. 2006; 7: 102. Published online 2006 May 2. doi: 10.1186/1471-2164-7-102

PMCID:: PMC1482699

Abstract Article PDF–696K

Select item 145885714.

Impaired neurogenesis and cardiovascular development in mice lacking the E3 ubiquitin ligases UBR1 and UBR2 of the N-end rule pathway

Jee Young An, Jai Wha Seo, Takafumi Tasaki, Min Jae Lee, Alexander Varshavsky, Yong Tae Kwon

Proc Natl Acad Sci U S A. 2006 Apr 18; 103(16): 6212–6217. Published online 2006 Apr 10. doi: 10.1073/pnas.0601700103

PMCID:: PMC1458857

Abstract Article PDF–2.9M

Select item 119025015.

A Family of Mammalian E3 Ubiquitin Ligases That Contain the UBR Box Motif and Recognize N-Degrons

Takafumi Tasaki, Lubbertus C. F. Mulder, Akihiro Iwamatsu, Min Jae Lee, Ilia V. Davydov, Alexander Varshavsky, Mark Muesing, Yong Tae Kwon

Mol Cell Biol. 2005 Aug; 25(16): 7120–7136. doi: 10.1128/MCB.25.16.7120-7136.2005

PMCID:: PMC1190250

Abstract Article PDF–1.2M

Select item 52892816.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099217.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098018.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 30876319.

GenePaint.org: an atlas of gene expression patterns in the mouse embryo

Axel Visel, Christina Thaller, Gregor Eichele

Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D552–D556. doi: 10.1093/nar/gkh029

PMCID:: PMC308763

Abstract Article PDF–253K

Select item 28355420.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

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