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Items: 1 to 20 of 29

1.
DNA double-strand break movement in heterochromatin depends on the histone acetyltransferase dGcn5
Apfrida Kendek, Arianna Sandron, Jan-Paul Lambooij, Serafin U Colmenares, Severina M Pociunaite, Iris Gooijers, Lars de Groot, Gary H Karpen, Aniek Janssen
Nucleic Acids Res. 2024 Oct 28; 52(19): 11753–11767. Published online 2024 Sep 11. doi: 10.1093/nar/gkae775
PMCID:
PMC11514474
AbstractArticlePDF–3.6M
2.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
3.
SOD1 activity threshold and TOR signalling modulate VAP(P58S) aggregation via reactive oxygen species-induced proteasomal degradation in a Drosophila model of amyotrophic lateral sclerosis
Kriti Chaplot, Lokesh Pimpale, Balaji Ramalingam, Senthilkumar Deivasigamani, Siddhesh S. Kamat, Girish S. Ratnaparkhi
Dis Model Mech. 2019 Feb 1; 12(2): dmm033803. Published online 2019 Feb 7. doi: 10.1242/dmm.033803
PMCID:
PMC6398501
AbstractArticle
4.
Nuclear F-actin and myosins drive relocalization of heterochromatic breaks
Christopher P. Caridi, Carla D’Agostino, Taehyun Ryu, Grzegorz Zapotoczny, Laetitia Delabaere, Xiao Li, Varandt Y. Khodaverdian, Nuno Amaral, Emily Lin, Alesandra Rau, Irene Chiolo
Nature. Author manuscript; available in PMC 2018 Dec 20.
Published in final edited form as: Nature. 2018 Jul; 559(7712): 54–60. Published online 2018 Jun 20. doi: 10.1038/s41586-018-0242-8
PMCID:
PMC6051730
AbstractArticlePDF–4.8M
5.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
6.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
7.
And yet, it moves: nuclear and chromatin dynamics of a heterochromatic double-strand break
P. Christopher Caridi, Laetitia Delabaere, Grzegorz Zapotoczny, Irene Chiolo
Philos Trans R Soc Lond B Biol Sci. 2017 Oct 5; 372(1731): 20160291. Published online 2017 Aug 28. doi: 10.1098/rstb.2016.0291
PMCID:
PMC5577469
AbstractArticlePDF–913K
8.
Nuclear Dynamics of Heterochromatin Repair
Nuno Amaral, Taehyun Ryu, Xiao Li, Irene Chiolo
Trends Genet. Author manuscript; available in PMC 2018 Feb 1.
Published in final edited form as: Trends Genet. 2017 Feb; 33(2): 86–100. Published online 2017 Jan 16. doi: 10.1016/j.tig.2016.12.004
PMCID:
PMC5285325
AbstractArticlePDF–854K
9.
Cervantes and Quijote protect heterochromatin from aberrant recombination and lead the way to the nuclear periphery
Taehyun Ryu, Melissa R. Bonner, Irene Chiolo
Nucleus. 2016; 7(5): 485–497. Published online 2016 Sep 27. doi: 10.1080/19491034.2016.1239683
PMCID:
PMC5120599
AbstractArticlePDF–1.0M
10.
Heterochromatic breaks move to the nuclear periphery to continue recombinational repair
Taehyun Ryu, Brett Spatola, Laetitia Delabaere, Katherine Bowlin, Hannah Hopp, Ryan Kunitake, Gary H. Karpen, Irene Chiolo
Nat Cell Biol. Author manuscript; available in PMC 2016 May 1.
Published in final edited form as: Nat Cell Biol. 2015 Nov; 17(11): 1401–1411. Published online 2015 Oct 26. doi: 10.1038/ncb3258
PMCID:
PMC4628585
AbstractArticlePDF–2.5M
11.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
12.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
13.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
14.
The Smc5/Smc6/MAGE Complex Confers Resistance to Caffeine and Genotoxic Stress in Drosophila melanogaster
Xiao Li, Ran Zhuo, Stanley Tiong, Francesca Di Cara, Kirst King-Jones, Sarah C. Hughes, Shelagh D. Campbell, Rachel Wevrick
PLoS One. 2013; 8(3): e59866. Published online 2013 Mar 28. doi: 10.1371/journal.pone.0059866
PMCID:
PMC3610895
AbstractArticlePDF–2.7M
15.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
16.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
17.
Condensins: universal organizers of chromosomes with diverse functions
Tatsuya Hirano
Genes Dev. 2012 Aug 1; 26(15): 1659–1678. doi: 10.1101/gad.194746.112
PMCID:
PMC3418584
AbstractArticlePDF–2.5M
18.
Double-Strand Breaks in Heterochromatin Move Outside of a Dynamic HP1a Domain to Complete Recombinational Repair
Irene Chiolo, Aki Minoda, Serafin U. Colmenares, Aris Polyzos, Sylvain V. Costes, Gary H. Karpen
Cell. Author manuscript; available in PMC 2012 Aug 12.
Published in final edited form as: Cell. 2011 Mar 4; 144(5): 732–744. Published online 2011 Feb 25. doi: 10.1016/j.cell.2011.02.012
PMCID:
PMC3417143
AbstractArticlePDF–3.1M
19.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
20.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M

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