PMC Links for GEO Profiles (Select 15578714) - PMC

Om Singh Rathore, Rui D. Silva, Mariana Ascensão-Ferreira, Ricardo Matos, Célia Carvalho, Bruno Marques, Margarida N. Tiago, Pedro Prudêncio, Raquel P. Andrade, Jean-Yves Roignant, Nuno L. Barbosa-Morais, Rui Gonçalo Martinho

RNA. 2020 Dec; 26(12): 1935–1956. doi: 10.1261/rna.077446.120

Correction in:: RNA. 2024 Jan; 30(1): 99.

PMCID:: PMC7668242

Abstract Article PDF–6.3M

Select item 73628794.

MISTERMINATE Mechanistically Links Mitochondrial Dysfunction with Proteostasis Failure

Zhihao Wu, Ishaq Tantray, Junghyun Lim, Songjie Chen, Yu Li, Zoe Davis, Cole Sitron, Jason Dong, Suzana Gispert, Georg Auburger, Onn Brandman, Xiaolin Bi, Michael Snyder, Bingwei Lu

Mol Cell. Author manuscript; available in PMC 2020 Jul 15.

Published in final edited form as: Mol Cell. 2019 Aug 22; 75(4): 835–848.e8. Published online 2019 Aug 1. doi: 10.1016/j.molcel.2019.06.031

PMCID:: PMC7362879

Abstract Article PDF–4.3M

Select item 72445575.

Premature termination codon readthrough in Drosophila varies in a developmental and tissue-specific manner

Yanan Chen, Tianhui Sun, Zhuo Bi, Jian-Quan Ni, Jose C. Pastor-Pareja, Babak Javid

Sci Rep. 2020; 10: 8485. Published online 2020 May 22. doi: 10.1038/s41598-020-65348-8

PMCID:: PMC7244557

Abstract Article PDF–2.2M

Select item 70930506.

Mechanisms Linking Mitochondria Dysfunction and Proteostasis Failure

Bingwei Lu, Su Guo

Trends Cell Biol. Author manuscript; available in PMC 2021 Apr 1.

Published in final edited form as: Trends Cell Biol. 2020 Apr; 30(4): 317–328. Published online 2020 Feb 12. doi: 10.1016/j.tcb.2020.01.008

PMCID:: PMC7093050

Abstract Article PDF–840K

Select item 65306427.

Drosophila CrebB is a Substrate of the Nonsense-Mediated mRNA Decay Pathway that Sustains Circadian Behaviors

Hwajung Ri, Jongbin Lee, Jun Young Sonn, Eunseok Yoo, Chunghun Lim, Joonho Choe

Mol Cells. 2019 Apr; 42(4): 301–312. Published online 2019 Feb 20. doi: 10.14348/molcells.2019.2451

PMCID:: PMC6530642

Abstract Article PDF–2.6M

Select item 64873338.

Reactivation of nonsense-mediated mRNA decay protects against C9orf72 dipeptide-repeat neurotoxicity

Wangchao Xu, Puhua Bao, Xin Jiang, Haifang Wang, Meiling Qin, Ruiqi Wang, Tao Wang, Yi Yang, Ileana Lorenzini, Lujian Liao, Rita Sattler, Jin Xu

Brain. 2019 May; 142(5): 1349–1364. Published online 2019 Apr 1. doi: 10.1093/brain/awz070

PMCID:: PMC6487333

Abstract Article PDF–2.1M

Select item 64473629.

The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci

Anand K Singh, Subhendu Roy Choudhury, Sandip De, Jie Zhang, Stephen Kissane, Vibha Dwivedi, Preethi Ramanathan, Marija Petric, Luisa Orsini, Daniel Hebenstreit, Saverio Brogna

eLife. 2019; 8: e41444. Published online 2019 Mar 25. doi: 10.7554/eLife.41444

PMCID:: PMC6447362

Abstract Article PDF–10M

Select item 584432210.

The Y Chromosome Modulates Splicing and Sex-Biased Intron Retention Rates in Drosophila

Meng Wang, Alan T. Branco, Bernardo Lemos

Genetics. 2018 Mar; 208(3): 1057–1067. Published online 2017 Dec 20. doi: 10.1534/genetics.117.300637

PMCID:: PMC5844322

Abstract Article PDF–1.3M

Select item 570780511.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900212.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 473800513.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 469182814.

Suppressor of sable [Su(s)] and Wdr82 down-regulate RNA from heat-shock-inducible repetitive elements by a mechanism that involves transcription termination

Paul Brewer-Jensen, Carrie B. Wilson, John Abernethy, Lonna Mollison, Samantha Card, Lillie L. Searles

RNA. 2016 Jan; 22(1): 139–154. doi: 10.1261/rna.048819.114

PMCID:: PMC4691828

Abstract Article PDF–586K

Select item 457069715.

Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach

Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera

BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3

PMCID:: PMC4570697

Abstract Article PDF–2.0M

Select item 452833016.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832917.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 439805018.

The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster

Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt

Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001

PMCID:: PMC4398050

Abstract Article PDF–8.9M

Select item 438036219.

Network Analyses Reveal Novel Aspects of ALS Pathogenesis

Mario Sanhueza, Andrea Chai, Colin Smith, Brett A. McCray, T. Ian Simpson, J. Paul Taylor, Giuseppa Pennetta

PLoS Genet. 2015 Mar; 11(3): e1005107. Published online 2015 Mar 31. doi: 10.1371/journal.pgen.1005107

PMCID:: PMC4380362

Abstract Article PDF–15M

Select item 435288720.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

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