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Items: 1 to 20 of 70

1.
Assessment of the roles of Spt5-nucleic acid contacts in promoter proximal pausing of RNA polymerase II
Roberta Dollinger, Eilene B. Deng, Josie Schultz, Sharon Wu, Haley R. Deorio, David S. Gilmour
J Biol Chem. 2023 Sep; 299(9): 105106. Published online 2023 Jul 28. doi: 10.1016/j.jbc.2023.105106
PMCID:
PMC10482750
AbstractArticlePDF–3.9M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
RNA Polymerase II “Pause” Prepares Promoters for Upcoming Transcription during Drosophila Development
Marina Yu. Mazina, Elena V. Kovalenko, Aleksandra A. Evdokimova, Maksim Erokhin, Darya Chetverina, Nadezhda E. Vorobyeva
Int J Mol Sci. 2022 Sep; 23(18): 10662. Published online 2022 Sep 13. doi: 10.3390/ijms231810662
PMCID:
PMC9503990
AbstractArticlePDF–3.8M
4.
Domesticated LTR-Retrotransposon gag-Related Gene (Gagr) as a Member of the Stress Response Network in Drosophila
Lidia Nefedova, Alexey Gigin, Alexander Kim
Life (Basel) 2022 Mar; 12(3): 364. Published online 2022 Mar 3. doi: 10.3390/life12030364
PMCID:
PMC8956099
AbstractArticlePDF–1.1M
5.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
6.
Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos
Anna C. Kögler, Yacine Kherdjemil, Katharina Bender, Adam Rabinowitz, Raquel Marco-Ferreres, Eileen E.M. Furlong
Dev Cell. 2021 Aug 23; 56(16): 2348–2363.e8. doi: 10.1016/j.devcel.2021.07.011
PMCID:
PMC8387026
AbstractArticle
7.
NELF‐A controls Drosophila healthspan by regulating heat‐shock protein‐mediated cellular protection and heterochromatin maintenance
Zhen‐Kai Ngian, Wei‐Qi Lin, Chin‐Tong Ong
Aging Cell. 2021 May; 20(5): e13348. Published online 2021 Mar 31. doi: 10.1111/acel.13348
Correction in:
Aging Cell. 2022 Feb; 21(2): e13547.
PMCID:
PMC8135010
AbstractArticlePDF–2.4M
8.
Unraveling the Genetic Basis for the Rapid Diversification of Male Genitalia between Drosophila Species
Joanna F D Hagen, Cláudia C Mendes, Shamma R Booth, Javier Figueras Jimenez, Kentaro M Tanaka, Franziska A Franke, Luis Baudouin-Gonzalez, Amber M Ridgway, Saad Arif, Maria D S Nunes, Alistair P McGregor
Mol Biol Evol. 2021 Feb; 38(2): 437–448. Published online 2020 Sep 15. doi: 10.1093/molbev/msaa232
Correction in:
Mol Biol Evol. 2022 Oct; 39(10): msac207.
PMCID:
PMC7826188
AbstractArticlePDF–648K
9.
The negative elongation factor NELF promotes induced transcriptional response of Drosophila ecdysone-dependent genes
Marina Yu. Mazina, Elena V. Kovalenko, Nadezhda E. Vorobyeva
Sci Rep. 2021; 11: 172. Published online 2021 Jan 8. doi: 10.1038/s41598-020-80650-1
PMCID:
PMC7794308
AbstractArticlePDF–5.5M
10.
Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes
Naomi Yamada, Matthew J Rossi, Nina Farrell, B Franklin Pugh, Shaun Mahony
Nucleic Acids Res. 2020 Nov 18; 48(20): 11215–11226. Published online 2020 Aug 4. doi: 10.1093/nar/gkaa618
PMCID:
PMC7672471
AbstractArticlePDF–4.0M
11.
Promoter Proximal Pausing Limits Tumorous Growth Induced by the Yki Transcription Factor in Drosophila
Sanket Nagarkar, Ruchi Wasnik, Pravallika Govada, Stephen Cohen, L. S. Shashidhara
Genetics. 2020 Sep; 216(1): 67–77. Published online 2020 Jul 30. doi: 10.1534/genetics.120.303419
PMCID:
PMC7463282
AbstractArticlePDF–2.1M
12.
Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila
Yuankai Dong, S. V. Satya Prakash Avva, Mukesh Maharjan, Janice Jacobi, Craig M. Hart
Genetics. 2020 May; 215(1): 89–101. Published online 2020 Mar 16. doi: 10.1534/genetics.120.303144
PMCID:
PMC7198264
AbstractArticlePDF–1.3M
13.
The RNA Polymerase II Core Promoter in Drosophila
Long Vo Ngoc, George A. Kassavetis, James T. Kadonaga
Genetics. 2019 May; 212(1): 13–24. Published online 2019 Mar 6. doi: 10.1534/genetics.119.302021
PMCID:
PMC6499525
AbstractArticlePDF–866K
14.
Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
Ezequiel Nazer, Ryan K. Dale, Cameron Palmer, Elissa P. Lei
Sci Rep. 2018; 8: 15685. Published online 2018 Oct 24. doi: 10.1038/s41598-018-34115-1
PMCID:
PMC6200757
AbstractArticlePDF–1.9M
15.
Collaborative repressive action of the antagonistic ETS transcription factors Pointed and Yan fine-tunes gene expression to confer robustness in Drosophila
Jemma L. Webber, Jie Zhang, Alex Massey, Nicelio Sanchez-Luege, Ilaria Rebay
Development. 2018 Jul 1; 145(13): dev165985. Published online 2018 Jul 2. doi: 10.1242/dev.165985
PMCID:
PMC6053666
AbstractArticle
16.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
17.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
18.
Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster
Punita Juneja, Andrew Quinn, Francis M. Jiggins
BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7
PMCID:
PMC5126864
AbstractArticlePDF–1.1M
19.
GAGA factor, a positive regulator of global gene expression, modulates transcriptional pausing and organization of upstream nucleosomes
Shih-Ying Tsai, Yuh-Long Chang, Krishna B. S. Swamy, Ruei-Lin Chiang, Der-Hwa Huang
Epigenetics Chromatin. 2016; 9: 32. Published online 2016 Jul 27. doi: 10.1186/s13072-016-0082-4
PMCID:
PMC4962548
AbstractArticlePDF–8.9M
20.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M

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