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Select item 104823911.

Dynamics of an incoherent feedforward loop drive ERK-dependent pattern formation in the early Drosophila embryo

Emily K. Ho, Harrison R. Oatman, Sarah E. McFann, Liu Yang, Heath E. Johnson, Stanislav Y. Shvartsman, Jared E. Toettcher

Development. 2023 Sep 1; 150(17): dev201818. Published online 2023 Sep 1. doi: 10.1242/dev.201818

PMCID:: PMC10482391

Abstract Article

Select item 101674792.

Stress‐sensitive dynamics of miRNAs and Elba1 in Drosophila embryogenesis

Lovisa Örkenby, Signe Skog, Helen Ekman, Alessandro Gozzo, Unn Kugelberg, Rashmi Ramesh, Srivathsa Magadi, Gianluca Zambanini, Anna Nordin, Claudio Cantú, Daniel Nätt, Anita Öst

Mol Syst Biol. 2023 May; 19(5): e11148. Published online 2023 Mar 20. doi: 10.15252/msb.202211148

PMCID:: PMC10167479

Abstract Article PDF–3.0M

Select item 98829583.

Combined modelling of mRNA decay dynamics and single-molecule imaging in the Drosophila embryo uncovers a role for P-bodies in 5′ to 3′ degradation

Lauren Forbes Beadle, Jennifer C. Love, Yuliya Shapovalova, Artem Artemev, Magnus Rattray, Hilary L. Ashe

PLoS Biol. 2023 Jan; 21(1): e3001956. Published online 2023 Jan 17. doi: 10.1371/journal.pbio.3001956

PMCID:: PMC9882958

Abstract Article PDF–3.3M

Select item 91696384.

Dynamics of Drosophila endoderm specification

Shannon E. Keenan, Maria Avdeeva, Liu Yang, Daniel S. Alber, Eric F. Wieschaus, Stanislav Y. Shvartsman

Proc Natl Acad Sci U S A. 2022 Apr 12; 119(15): e2112892119. Published online 2022 Apr 11. doi: 10.1073/pnas.2112892119

PMCID:: PMC9169638

Abstract Article PDF–3.9M

Select item 84962705.

Genome-wide analysis in Drosophila reveals diet-by-gene interactions and uncovers diet-responsive genes

Deanne Francis, Shila Ghazanfar, Essi Havula, James R Krycer, Dario Strbenac, Alistair Senior, Annabel Y Minard, Thomas Geddes, Marin E Nelson, Fiona Weiss, Jacqueline Stöckli, Jean Y H Yang, David E James

G3 (Bethesda) 2021 Oct; 11(10): jkab171. Published online 2021 May 27. doi: 10.1093/g3journal/jkab171

PMCID:: PMC8496270

Abstract Article PDF–819K

Select item 76781016.

The homeodomain transcription factor Orthopedia is involved in development of the Drosophila hindgut

Kirsten Hildebrandt, Nicole Bach, Dieter Kolb, Uwe Walldorf

Hereditas. 2020; 157: 46. Published online 2020 Nov 19. doi: 10.1186/s41065-020-00160-y

PMCID:: PMC7678101

Abstract Article PDF–6.3M

Select item 72689977.

Collective Migrations of Drosophila Embryonic Trunk and Caudal Mesoderm-Derived Muscle Precursor Cells

Jingjing Sun, Frank Macabenta, Zsuzsa Akos, Angelike Stathopoulos

Genetics. 2020 Jun; 215(2): 297–322. Published online 2020 Apr 22. doi: 10.1534/genetics.120.303258

PMCID:: PMC7268997

Abstract Article PDF–2.3M

Select item 71903588.

Zygotic pioneer factor activity of Odd-paired/Zic is necessary for late function of the Drosophila segmentation network

Isabella V Soluri, Lauren M Zumerling, Omar A Payan Parra, Eleanor G Clark, Shelby A Blythe

eLife. 2020; 9: e53916. Published online 2020 Apr 29. doi: 10.7554/eLife.53916

PMCID:: PMC7190358

Abstract Article PDF–4.0M

Select item 66483289.

Accurate prediction of boundaries of high resolution topologically associated domains (TADs) in fruit flies using deep learning

John Henderson, Vi Ly, Shawn Olichwier, Pranik Chainani, Yu Liu, Benjamin Soibam

Nucleic Acids Res. 2019 Jul 26; 47(13): e78. Published online 2019 May 3. doi: 10.1093/nar/gkz315

PMCID:: PMC6648328

Abstract Article PDF–2.0M

Select item 658955610.

Interphase cohesin regulation ensures mitotic fidelity after genome reduplication

Benjamin M. Stormo, Donald T. Fox

Mol Biol Cell. 2019 Jan 15; 30(2): 219–227. doi: 10.1091/mbc.E17-10-0582

PMCID:: PMC6589556

Abstract Article PDF–1.6M

Select item 648595611.

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk

Cell Rep. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071

PMCID:: PMC6485956

Abstract Article PDF–1.6M

Select item 637149312.

Contrasting patterns of molecular evolution in metazoan germ line genes

Carrie A. Whittle, Cassandra G. Extavour

BMC Evol Biol. 2019; 19: 53. Published online 2019 Feb 11. doi: 10.1186/s12862-019-1363-x

PMCID:: PMC6371493

Abstract Article PDF–1.6M

Select item 614702113.

Comparative Transcriptomics in Two Extreme Neopterans Reveals General Trends in the Evolution of Modern Insects

Guillem Ylla, Maria-Dolors Piulachs, Xavier Belles

iScience. 2018 Jun 29; 4: 164–179. Published online 2018 May 28. doi: 10.1016/j.isci.2018.05.017

PMCID:: PMC6147021

Abstract Article PDF–13M

Select item 613097314.

Erez Cohen, Scott R Allen, Jessica K Sawyer, Donald T Fox

eLife. 2018; 7: e38327. Published online 2018 Aug 17. doi: 10.7554/eLife.38327

PMCID:: PMC6130973

Abstract Article PDF–7.3M

Select item 590644915.

The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster

Lisa Jehrke, Fiona A. Stewart, Andrea Droste, Mathias Beller

Sci Rep. 2018; 8: 6215. Published online 2018 Apr 18. doi: 10.1038/s41598-018-24542-5

PMCID:: PMC5906449

Abstract Article PDF–4.5M

Select item 570780516.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900217.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 532507718.

Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster

Peter A. Combs, Michael B. Eisen

Version 1. F1000Res. 2017; 6: 41. Published online 2017 Jan 12. doi: 10.12688/f1000research.9720.1

PMCID:: PMC5325077

Abstract Article PDF–10M

Select item 456802519.

Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions

Albert J. Erives

Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1

PMCID:: PMC4568025

Abstract Article PDF–2.8M

Select item 452833020.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937