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Select item 111657171.

Two sequential gene expression programs bridged by cell division support long-distance collective cell migration

Jingjing Sun, Ayse Damla Durmaz, Aswini Babu, Frank Macabenta, Angelike Stathopoulos

Development. 2024 May 15; 151(10): dev202262. Published online 2024 May 17. doi: 10.1242/dev.202262

PMCID:: PMC11165717

Abstract Article

Select item 101057362.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 96356443.

Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway

Rujuta Deshpande, Byoungchun Lee, Savraj S Grewal

G3 (Bethesda) 2022 Nov; 12(11): jkac163. Published online 2022 Jul 4. doi: 10.1093/g3journal/jkac163

PMCID:: PMC9635644

Abstract Article PDF–2.2M

Select item 92699264.

A comprehensive study of arthropod and onychophoran Fox gene expression patterns

Ralf Janssen, Christoph Schomburg, Nikola-Michael Prpic, Graham E. Budd

PLoS One. 2022; 17(7): e0270790. Published online 2022 Jul 8. doi: 10.1371/journal.pone.0270790

PMCID:: PMC9269926

Abstract Article PDF–6.5M

Select item 90509455.

Visceral mesoderm signaling regulates assembly position and function of the Drosophila testis niche

Lauren Anllo, Stephen DiNardo

Dev Cell. Author manuscript; available in PMC 2023 Apr 25.

Published in final edited form as: Dev Cell. 2022 Apr 25; 57(8): 1009–1023.e5. Published online 2022 Apr 6. doi: 10.1016/j.devcel.2022.03.009

PMCID:: PMC9050945

Abstract Article PDF–3.2M

Select item 90183826.

Thermodynamics-based modeling reveals regulatory effects of indirect transcription factor-DNA binding

Shounak Bhogale, Saurabh Sinha

iScience. 2022 May 20; 25(5): 104152. Published online 2022 Mar 24. doi: 10.1016/j.isci.2022.104152

PMCID:: PMC9018382

Abstract Article PDF–2.0M

Select item 89181797.

Phylogenetic analysis of forkhead transcription factors in the Panarthropoda

Christoph Schomburg, Ralf Janssen, Nikola-Michael Prpic

Dev Genes Evol. 2022; 232(1): 39–48. Published online 2022 Mar 1. doi: 10.1007/s00427-022-00686-3

PMCID:: PMC8918179

Abstract Article PDF–1.5M

Select item 88933218.

Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories

Stefano Secchia, Mattia Forneris, Tobias Heinen, Oliver Stegle, Eileen E.M. Furlong

Dev Cell. 2022 Feb 28; 57(4): 496–511.e8. doi: 10.1016/j.devcel.2022.01.016

PMCID:: PMC8893321

Abstract Article

Select item 86865239.

Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue

Colin T. Waters, Stephen S. Gisselbrecht, Yuliya A. Sytnikova, Tiziana M. Cafarelli, David E. Hill, Martha L. Bulyk

Genome Biol. 2021; 22: 348. Published online 2021 Dec 20. doi: 10.1186/s13059-021-02574-x

PMCID:: PMC8686523

Abstract Article PDF–1.7M

Select item 838702610.

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

Anna C. Kögler, Yacine Kherdjemil, Katharina Bender, Adam Rabinowitz, Raquel Marco-Ferreres, Eileen E.M. Furlong

Dev Cell. 2021 Aug 23; 56(16): 2348–2363.e8. doi: 10.1016/j.devcel.2021.07.011

PMCID:: PMC8387026

Abstract Article

Select item 798619411.

Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster

María Bogaerts‐Márquez, Sara Guirao‐Rico, Mathieu Gautier, Josefa González

Mol Ecol. 2021 Feb; 30(4): 938–954. Published online 2021 Jan 26. doi: 10.1111/mec.15783

PMCID:: PMC7986194

Abstract Article PDF–1.0M

Select item 790466212.

Multiple Niche Compartments Orchestrate Stepwise Germline Stem Cell Progeny Differentiation

Renjun Tu, Bo Duan, Xiaoqing Song, Shiyuan Chen, Allison Scott, Kate Hall, Jillian Blanck, Dustin DeGraffenreid, Hua Li, Anoja Perera, Jeff Haug, Ting Xie

Curr Biol. Author manuscript; available in PMC 2022 Feb 22.

Published in final edited form as: Curr Biol. 2021 Feb 22; 31(4): 827–839.e3. Published online 2020 Dec 23. doi: 10.1016/j.cub.2020.12.024

PMCID:: PMC7904662

Abstract Article PDF–1.8M

Select item 726899713.

Collective Migrations of Drosophila Embryonic Trunk and Caudal Mesoderm-Derived Muscle Precursor Cells

Jingjing Sun, Frank Macabenta, Zsuzsa Akos, Angelike Stathopoulos

Genetics. 2020 Jun; 215(2): 297–322. Published online 2020 Apr 22. doi: 10.1534/genetics.120.303258

PMCID:: PMC7268997

Abstract Article PDF–2.3M

Select item 696157814.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 660186815.

The Role of Chromatin Accessibility in cis-Regulatory Evolution

Pei-Chen Peng, Pierre Khoueiry, Charles Girardot, James P Reddington, David A Garfield, Eileen E M Furlong, Saurabh Sinha

Genome Biol Evol. 2019 Jul; 11(7): 1813–1828. Published online 2019 May 22. doi: 10.1093/gbe/evz103

PMCID:: PMC6601868

Abstract Article PDF–951K

Select item 648595616.

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk

Cell Rep. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071

PMCID:: PMC6485956

Abstract Article PDF–1.6M

Select item 617725717.

Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila

Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet

eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853

PMCID:: PMC6177257

Abstract Article PDF–4.9M

Select item 570780518.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 564721619.

Comparative analysis of gene expression profiles for several migrating cell types identifies cell migration regulators

Young-Kyung Bae, Frank Macabenta, Heather Leigh Curtis, Angelike Stathopoulos

Mech Dev. Author manuscript; available in PMC 2018 Dec 1.

Published in final edited form as: Mech Dev. 2017 Dec; 148: 40–55. Published online 2017 Apr 18. doi: 10.1016/j.mod.2017.04.004

PMCID:: PMC5647216

Abstract Article PDF–2.7M

Select item 555027620.

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity

Pierre Khoueiry, Charles Girardot, Lucia Ciglar, Pei-Chen Peng, E Hilary Gustafson, Saurabh Sinha, Eileen EM Furlong

eLife. 2017; 6: e28440. Published online 2017 Aug 9. doi: 10.7554/eLife.28440

PMCID:: PMC5550276

Abstract Article PDF–2.7M

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