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Items: 20

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
A phosphatase‐centric mechanism drives stress signaling response
David Maria Hollenstein, Gabriela Gérecová, Natalie Romanov, Jessica Ferrari, Jiri Veis, Marion Janschitz, Reinhard Beyer, Christoph Schüller, Egon Ogris, Markus Hartl, Gustav Ammerer, Wolfgang Reiter
EMBO Rep. 2021 Nov 4; 22(11): e52476. Published online 2021 Sep 24. doi: 10.15252/embr.202152476
PMCID:
PMC8567219
AbstractArticlePDF–1.3M
5.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
6.
AP‐3 vesicle uncoating occurs after HOPS‐dependent vacuole tethering
Jannis Schoppe, Muriel Mari, Erdal Yavavli, Kathrin Auffarth, Margarita Cabrera, Stefan Walter, Florian Fröhlich, Christian Ungermann
EMBO J. 2020 Oct 15; 39(20): e105117. Published online 2020 Aug 25. doi: 10.15252/embj.2020105117
PMCID:
PMC7560216
AbstractArticlePDF–3.6M
7.
Nutrient Signaling via the TORC1-Greatwall-PP2AB55δ Pathway Is Responsible for the High Initial Rates of Alcoholic Fermentation in Sake Yeast Strains of Saccharomyces cerevisiae
Daisuke Watanabe, Takuma Kajihara, Yukiko Sugimoto, Kenichi Takagi, Megumi Mizuno, Yan Zhou, Jiawen Chen, Kojiro Takeda, Hisashi Tatebe, Kazuhiro Shiozaki, Nobushige Nakazawa, Shingo Izawa, Takeshi Akao, Hitoshi Shimoi, Tatsuya Maeda, Hiroshi Takagi
Appl Environ Microbiol. 2019 Jan 1; 85(1): e02083-18. Prepublished online 2018 Oct 19. Published online 2018 Dec 13. doi: 10.1128/AEM.02083-18
PMCID:
PMC6293112
AbstractArticlePDF–2.2M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
10.
Homeostatic control of START through negative feedback between Cln3-Cdk1 and Rim15/Greatwall kinase in budding yeast
Nicolas Talarek, Elisabeth Gueydon, Etienne Schwob
eLife. 2017; 6: e26233. Published online 2017 Jun 10. doi: 10.7554/eLife.26233
PMCID:
PMC5484617
AbstractArticlePDF–3.9M
11.
Protein Kinase C Controls Binding of Igo/ENSA Proteins to Protein Phosphatase 2A in Budding Yeast
Vu Thai, Noah Dephoure, Amit Weiss, Jacqueline Ferguson, Ricardo Leitao, Steven P. Gygi, Douglas R. Kellogg
J Biol Chem. 2017 Mar 24; 292(12): 4925–4941. Published online 2017 Jan 18. doi: 10.1074/jbc.M116.753004
PMCID:
PMC5377806
AbstractArticlePDF–3.1M
12.
Large-Scale Analysis of Kinase Signaling in Yeast Pseudohyphal Development Identifies Regulation of Ribonucleoprotein Granules
Christian A. Shively, Hye Kyong Kweon, Kaitlyn L. Norman, Dattatreya Mellacheruvu, Tao Xu, Daniel T. Sheidy, Craig J. Dobry, Ivan Sabath, Eric E. P. Cosky, Elizabeth J. Tran, Alexey Nesvizhskii, Philip C. Andrews, Anuj Kumar
PLoS Genet. 2015 Oct; 11(10): e1005564. Published online 2015 Oct 8. doi: 10.1371/journal.pgen.1005564
PMCID:
PMC4598065
AbstractArticlePDF–7.6M
13.
TORC1 controls G1–S cell cycle transition in yeast via Mpk1 and the greatwall kinase pathway
Marta Moreno-Torres, Malika Jaquenoud, Claudio De Virgilio
Nat Commun. 2015; 6: 8256. Published online 2015 Sep 10. doi: 10.1038/ncomms9256
PMCID:
PMC4579850
AbstractArticlePDF–1.9M
14.
Comparative genetic analysis of PP2A-Cdc55 regulators in budding yeast
Valentina Rossio, Anna Kazatskaya, Mayo Hirabayashi, Satoshi Yoshida
Cell Cycle. 2014 Jul 1; 13(13): 2073–2083. Published online 2014 May 6. doi: 10.4161/cc.29064
PMCID:
PMC4111699
AbstractArticlePDF–1.6M
15.
The Rim15-Endosulfine-PP2ACdc55 Signalling Module Regulates Entry into Gametogenesis and Quiescence via Distinct Mechanisms in Budding Yeast
Sourav Sarkar, Jacob Z. Dalgaard, Jonathan B. A. Millar, Prakash Arumugam
PLoS Genet. 2014 Jun; 10(6): e1004456. Published online 2014 Jun 26. doi: 10.1371/journal.pgen.1004456
PMCID:
PMC4072559
AbstractArticlePDF–4.0M
16.
Quantification of mRNA stability of stress-responsive yeast genes following conditional excision of open reading frames
Nicolas Talarek, Séverine Bontron, Claudio De Virgilio
RNA Biol. 2013 Aug 1; 10(8): 1299–1306. Published online 2013 Jun 13. doi: 10.4161/rna.25355
PMCID:
PMC3817151
AbstractArticlePDF–1.3M
17.
Budding Yeast Greatwall and Endosulfines Control Activity and Spatial Regulation of PP2ACdc55 for Timely Mitotic Progression
Maria Angeles Juanes, Rita Khoueiry, Thomas Kupka, Anna Castro, Ingrid Mudrak, Egon Ogris, Thierry Lorca, Simonetta Piatti
PLoS Genet. 2013 Jul; 9(7): e1003575. Published online 2013 Jul 4. doi: 10.1371/journal.pgen.1003575
PMCID:
PMC3701715
AbstractArticlePDF–3.9M
18.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
19.
Initiation of the TORC1-Regulated G0 Program Requires Igo1 and Igo2, which License Specific mRNAs to Bypass Degradation via the 5′-3′ mRNA Decay Pathway
Nicolas Talarek, Elisabetta Cameroni, Malika Jaquenoud, Xuan Luo, Séverine Bontron, Soyeon Lippman, Geeta Devgan, Michael Snyder, James R. Broach, Claudio De Virgilio
Mol Cell. Author manuscript; available in PMC 2011 May 14.
Published in final edited form as: Mol Cell. 2010 May 14; 38(3): 345–355. doi: 10.1016/j.molcel.2010.02.039
PMCID:
PMC2919320
AbstractArticlePDF–1.2M
20.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M

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