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Select item 114236781.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 110734332.

The crystal structure of Atg18 reveals a new binding site for Atg2 in Saccharomyces cerevisiae

Yuqing Lei, Dan Tang, Ga Liao, Liangting Xu, Shiyan Liu, Qianqian Chen, Chunxia Li, Jinsong Duan, Kunjie Wang, Jiawei Wang, Bo Sun, Zhonghan Li, Lunzhi Dai, Wei Cheng, Shiqian Qi, Kefeng Lu

Cell Mol Life Sci. 2021 Mar; 78(5): 2131–2143. Published online 2020 Aug 18. doi: 10.1007/s00018-020-03621-9

PMCID:: PMC11073433

Abstract Article PDF–2.6M

Select item 108724773.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001384.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102410025.

Atg9 interactions via its transmembrane domains are required for phagophore expansion during autophagy

Sabrina Chumpen Ramirez, Rubén Gómez-Sánchez, Pauline Verlhac, Ralph Hardenberg, Eleonora Margheritis, Katia Cosentino, Fulvio Reggiori, Christian Ungermann

Autophagy. 2023; 19(5): 1459–1478. Published online 2022 Nov 10. doi: 10.1080/15548627.2022.2136340

PMCID:: PMC10241002

Abstract Article PDF–3.5M

Select item 102350866.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 101482357.

Parallel phospholipid transfer by Vps13 and Atg2 determines autophagosome biogenesis dynamics

Rahel Dabrowski, Susanna Tulli, Martin Graef

J Cell Biol. 2023 Jul 3; 222(7): e202211039. Published online 2023 Apr 28. doi: 10.1083/jcb.202211039

PMCID:: PMC10148235

Abstract Article PDF–4.2M

Select item 99950778.

The TORC1 activates Rpd3L complex to deacetylate Ino80 and H2A.Z and repress autophagy

Xin Li, Qianyun Mei, Qi Yu, Min Wang, Fei He, Duncheng Xiao, Huan Liu, Feng Ge, Xilan Yu, Shanshan Li

Sci Adv. 2023 Mar; 9(10): eade8312. Published online 2023 Mar 8. doi: 10.1126/sciadv.ade8312

PMCID:: PMC9995077

Abstract Article PDF–2.7M

Select item 98811769.

The S. cerevisiae m⁶A-reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts

Jérémy Scutenaire, Damien Plassard, Mélody Matelot, Tommaso Villa, Julie Zumsteg, Domenico Libri, Bertrand Séraphin

Nucleic Acids Res. 2023 Jan 25; 51(2): 517–535. Published online 2022 Aug 8. doi: 10.1093/nar/gkac640

PMCID:: PMC9881176

Abstract Article PDF–7.3M

Select item 980994210.

Vacuole fragmentation depends on a novel Atg18-containing retromer-complex

Lisa Marquardt, Matthew Taylor, Florian Kramer, Kerstin Schmitt, Gerhard H. Braus, Oliver Valerius, Michael Thumm

Autophagy. 2023; 19(1): 278–295. Published online 2022 May 15. doi: 10.1080/15548627.2022.2072656

PMCID:: PMC9809942

Abstract Article PDF–5.1M

Select item 980667711.

Regulation of telomere silencing by the core histones–autophagy–Sir2 axis

Qianyun Mei, Qi Yu, Xin Li, Jianguo Chen, Xilan Yu

Life Sci Alliance. 2023 Mar; 6(3): e202201614. Published online 2022 Dec 30. doi: 10.26508/lsa.202201614

PMCID:: PMC9806677

Abstract Article PDF–3.9M

Select item 928602312.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 920981113.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224