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Items: 1 to 20 of 57

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress
Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup
Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536
PMCID:
PMC9638028
AbstractArticle
3.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Set2 histone methyltransferase regulates transcription coupled-nucleotide excision repair in yeast
Kathiresan Selvam, Dalton A. Plummer, Peng Mao, John J. Wyrick
PLoS Genet. 2022 Mar; 18(3): e1010085. Published online 2022 Mar 9. doi: 10.1371/journal.pgen.1010085
PMCID:
PMC8936446
AbstractArticlePDF–3.6M
6.
Regulation of UV damage repair in quiescent yeast cells
Lindsey J. Long, Po-Hsuen Lee, Eric M. Small, Cory Hillyer, Yan Guo, Mary Ann Osley
DNA Repair (Amst) Author manuscript; available in PMC 2021 Feb 18.
Published in final edited form as: DNA Repair (Amst). 2020 Jun; 90: 102861. Published online 2020 Apr 30. doi: 10.1016/j.dnarep.2020.102861
PMCID:
PMC7891302
AbstractArticlePDF–1018K
7.
Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma
Marian F. Laughery, Alexander J. Brown, Kaitlynne A. Bohm, Smitha Sivapragasam, Haley S. Morris, Mila Tchmola, Angelica D. Washington, Debra Mitchell, Stephen Mather, Ewa P. Malc, Piotr A. Mieczkowski, Steven A. Roberts, John J. Wyrick
Cell Rep. Author manuscript; available in PMC 2020 Dec 2.
Published in final edited form as: Cell Rep. 2020 Nov 17; 33(7): 108401. doi: 10.1016/j.celrep.2020.108401
PMCID:
PMC7709870
AbstractArticlePDF–2.6M
8.
Genome-wide role of Rad26 in promoting transcription-coupled nucleotide excision repair in yeast chromatin
Mingrui Duan, Kathiresan Selvam, John J. Wyrick, Peng Mao
Proc Natl Acad Sci U S A. 2020 Aug 4; 117(31): 18608–18616. Published online 2020 Jul 20. doi: 10.1073/pnas.2003868117
PMCID:
PMC7414089
AbstractArticlePDF–1.5M
9.
A genetic map of the response to DNA damage in human cells
Michele Olivieri, Tiffany Cho, Alejandro Álvarez-Quilón, Kejiao Li, Matthew J. Schellenberg, Michal Zimmermann, Nicole Hustedt, Silvia Emma Rossi, Salomé Adam, Henrique Melo, Anne Margriet Heijink, Guillermo Sastre-Moreno, Nathalie Moatti, Rachel K. Szilard, Andrea McEwan, Alexanda K. Ling, Almudena Serrano-Benitez, Tajinder Ubhi, Sumin Feng, Judy Pawling, Irene Delgado-Sainz, Michael W. Ferguson, James W. Dennis, Grant W. Brown, Felipe Cortés-Ledesma, R. Scott Williams, Alberto Martin, Dongyi Xu, Daniel Durocher
Cell. Author manuscript; available in PMC 2021 Jul 23.
Published in final edited form as: Cell. 2020 Jul 23; 182(2): 481–496.e21. Published online 2020 Jul 9. doi: 10.1016/j.cell.2020.05.040
PMCID:
PMC7384976
AbstractArticlePDF–2.5M
10.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
11.
Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in skin cancer
Peng Mao, Michael J. Smerdon, Steven A. Roberts, John J. Wyrick
Genome Res. 2020 Jan; 30(1): 12–21. doi: 10.1101/gr.253146.119
PMCID:
PMC6961582
AbstractArticlePDF–2.8M
12.
N-terminal methionine excision of proteins creates tertiary destabilizing N-degrons of the Arg/N-end rule pathway
Kha The Nguyen, Jeong-Mok Kim, Sang-Eun Park, Cheol-Sang Hwang
J Biol Chem. 2019 Mar 22; 294(12): 4464–4476. Published online 2019 Jan 23. doi: 10.1074/jbc.RA118.006913
PMCID:
PMC6433082
AbstractArticlePDF–2.3M
13.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
14.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
15.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
16.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
17.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
18.
Global genome nucleotide excision repair is organized into domains that promote efficient DNA repair in chromatin
Shirong Yu, Katie Evans, Patrick van Eijk, Mark Bennett, Richard M. Webster, Matthew Leadbitter, Yumin Teng, Raymond Waters, Stephen P. Jackson, Simon H. Reed
Genome Res. 2016 Oct; 26(10): 1376–1387. doi: 10.1101/gr.209106.116
PMCID:
PMC5052058
AbstractArticlePDF–1.2M
19.
Mutations at the Subunit Interface of Yeast Proliferating Cell Nuclear Antigen Reveal a Versatile Regulatory Domain
Miklos Halmai, Orsolya Frittmann, Zoltan Szabo, Andreea Daraba, Vamsi K. Gali, Eva Balint, Ildiko Unk
PLoS One. 2016; 11(8): e0161307. Published online 2016 Aug 18. doi: 10.1371/journal.pone.0161307
PMCID:
PMC4990258
AbstractArticlePDF–7.9M
20.
High-Throughput Genetic and Gene Expression Analysis of the RNAPII-CTD Reveals Unexpected Connections to SRB10/CDK8
Maria J. Aristizabal, Gian Luca Negri, Joris J. Benschop, Frank C. P. Holstege, Nevan J. Krogan, Michael S. Kobor
PLoS Genet. 2013 Aug; 9(8): e1003758. Published online 2013 Aug 29. doi: 10.1371/journal.pgen.1003758
PMCID:
PMC3757075
AbstractArticlePDF–4.4M

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