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Items: 1 to 20 of 77

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Proper RPA acetylation promotes accurate DNA replication and repair
Xiaoli Gan, Yueyue Zhang, Donghao Jiang, Jingyao Shi, Han Zhao, Chengyu Xie, Yanyan Wang, Jingyan Xu, Xinghua Zhang, Gang Cai, Hailong Wang, Jun Huang, Xuefeng Chen
Nucleic Acids Res. 2023 Jun 23; 51(11): 5565–5583. Published online 2023 May 4. doi: 10.1093/nar/gkad291
PMCID:
PMC10287905
AbstractArticlePDF–3.3M
4.
A DNA damage–induced phosphorylation circuit enhances Mec1ATR Ddc2ATRIP recruitment to Replication Protein A
Luke A. Yates, Elias A. Tannous, R. Marc Morgan, Peter M. Burgers, Xiaodong Zhang
Proc Natl Acad Sci U S A. 2023 Apr 4; 120(14): e2300150120. Published online 2023 Mar 30. doi: 10.1073/pnas.2300150120
PMCID:
PMC10083555
AbstractArticlePDF–2.3M
5.
Rtt105 regulates RPA function by configurationally stapling the flexible domains
Sahiti Kuppa, Jaigeeth Deveryshetty, Rahul Chadda, Jenna R. Mattice, Nilisha Pokhrel, Vikas Kaushik, Angela Patterson, Nalini Dhingra, Sushil Pangeni, Marisa K. Sadauskas, Sajad Shiekh, Hamza Balci, Taekjip Ha, Xiaolan Zhao, Brian Bothner, Edwin Antony
Nat Commun. 2022; 13: 5152. Published online 2022 Sep 2. doi: 10.1038/s41467-022-32860-6
PMCID:
PMC9440123
AbstractArticlePDF–2.8M
6.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
DNA asymmetry promotes SUMO modification of the single‐stranded DNA‐binding protein RPA
Laurent Cappadocia, Tomasz Kochańczyk, Christopher D Lima
EMBO J. 2021 Nov 15; 40(22): e103787. Published online 2021 Sep 29. doi: 10.15252/embj.2019103787
PMCID:
PMC8591536
AbstractArticlePDF–3.1M
9.
The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF
Matthew Jessulat, Shahreen Amin, Mohsen Hooshyar, Ramy Malty, Mohamed Taha Moutaoufik, Mara Zilocchi, Zoe Istace, Sadhna Phanse, Hiroyuki Aoki, Katayoun Omidi, Daniel Burnside, Bahram Samanfar, Khaled A Aly, Ashkan Golshani, Mohan Babu
Nucleic Acids Res. 2021 Aug 20; 49(14): 8145–8160. Published online 2021 Jul 9. doi: 10.1093/nar/gkab585
PMCID:
PMC8373142
AbstractArticlePDF–2.0M
10.
Yeast Bromodomain Factor 1 and Its Human Homolog TAF1 Play Conserved Roles in Promoting Homologous Recombination
Haoyang Peng, Simin Zhang, Yihan Peng, Shuangyi Zhu, Xin Zhao, Xiaocong Zhao, Shuangshuang Yang, Guangxue Liu, Yang Dong, Xiaoli Gan, Qing Li, Xinghua Zhang, Huadong Pei, Xuefeng Chen
Adv Sci (Weinh) 2021 Aug; 8(15): 2100753. Published online 2021 May 30. doi: 10.1002/advs.202100753
PMCID:
PMC8336524
AbstractArticlePDF–6.4M
11.
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone
Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.
Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855
PMCID:
PMC7386433
AbstractArticlePDF–1.0M
12.
Relocation of Collapsed Forks to the Nuclear Pore Complex Depends on Sumoylation of DNA Repair Proteins and Permits Rad51 Association
Jenna M. Whalen, Nalini Dhingra, Lei Wei, Xiaolan Zhao, Catherine H. Freudenreich
Cell Rep. Author manuscript; available in PMC 2020 Jul 8.
Published in final edited form as: Cell Rep. 2020 May 12; 31(6): 107635. doi: 10.1016/j.celrep.2020.107635
PMCID:
PMC7344339
AbstractArticlePDF–1.9M
13.
Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions
Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch
Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680
PMCID:
PMC7273177
AbstractArticle
14.
Single-Stranded DNA Curtains for Studying the Srs2 Helicase Using Total Internal Reflection Fluorescence Microscopy
Luisina De Tullio, Kyle Kaniecki, Eric C. Greene
Methods Enzymol. Author manuscript; available in PMC 2020 Apr 21.
Published in final edited form as: Methods Enzymol. 2018; 600: 407–437. Published online 2018 Feb 1. doi: 10.1016/bs.mie.2017.12.004
PMCID:
PMC7173762
AbstractArticlePDF–1.4M
15.
Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis
Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos
Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022
PMCID:
PMC6715774
AbstractArticle
16.
Competing interaction partners modulate the activity of Sgs1 helicase during DNA end resection
Kristina Kasaciunaite, Fergus Fettes, Maryna Levikova, Peter Daldrop, Roopesh Anand, Petr Cejka, Ralf Seidel
EMBO J. 2019 Jul 1; 38(13): e101516. Published online 2019 Jun 7. doi: 10.15252/embj.2019101516
PMCID:
PMC6601037
AbstractArticlePDF–6.0M
17.
The RecQ helicase Sgs1 drives ATP-dependent disruption of Rad51 filaments
J Brooks Crickard, Chaoyou Xue, Weibin Wang, Youngho Kwon, Patrick Sung, Eric C Greene
Nucleic Acids Res. 2019 May 21; 47(9): 4694–4706. Published online 2019 Mar 27. doi: 10.1093/nar/gkz186
Correction in:
Nucleic Acids Res. 2024 Jun 10; 52(10): 6093.
PMCID:
PMC6511845
AbstractArticlePDF–7.2M
18.
Regulatory control of Sgs1 and Dna2 during eukaryotic DNA end resection
Chaoyou Xue, Weibin Wang, J. Brooks Crickard, Corentin J. Moevus, Youngho Kwon, Patrick Sung, Eric C. Greene
Proc Natl Acad Sci U S A. 2019 Mar 26; 116(13): 6091–6100. Published online 2019 Mar 8. doi: 10.1073/pnas.1819276116
PMCID:
PMC6442620
AbstractArticlePDF–1.8M
19.
RPA resolves conflicting activities of accessory proteins during reconstitution of Dmc1-mediated meiotic recombination
Yuen-Ling Chan, Annie Zhang, Benjamin P Weissman, Douglas K Bishop
Nucleic Acids Res. 2019 Jan 25; 47(2): 747–761. Published online 2018 Nov 20. doi: 10.1093/nar/gky1160
PMCID:
PMC6344864
AbstractArticlePDF–3.5M
20.
A structural and dynamic model for the assembly of Replication Protein A on single-stranded DNA
Luke A. Yates, Ricardo J. Aramayo, Nilisha Pokhrel, Colleen C. Caldwell, Joshua A. Kaplan, Rajika L. Perera, Maria Spies, Edwin Antony, Xiaodong Zhang
Nat Commun. 2018; 9: 5447. Published online 2018 Dec 21. doi: 10.1038/s41467-018-07883-7
PMCID:
PMC6303327
AbstractArticlePDF–2.7M

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