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Items: 1 to 20 of 52

1.
Inability to rescue stalled ribosomes results in overactivation of the integrated stress response
Ankanahalli N. Nanjaraj Urs, Victor Lasehinde, Lucas Kim, Elesa McDonald, Liewei L. Yan, Hani S. Zaher
J Biol Chem. 2024 May; 300(5): 107290. Published online 2024 Apr 16. doi: 10.1016/j.jbc.2024.107290
PMCID:
PMC11106528
AbstractArticlePDF–1.6M
2.
The kinase Rio1 and a ribosome collision-dependent decay pathway survey the integrity of 18S rRNA cleavage
Melissa D. Parker, Elise S. Brunk, Adam J. Getzler, Katrin Karbstein
PLoS Biol. 2024 Apr; 22(4): e3001767. Published online 2024 Apr 25. doi: 10.1371/journal.pbio.3001767
PMCID:
PMC11045238
AbstractArticlePDF–2.8M
3.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae
Laura Meyer, Baptiste Courtin, Maïté Gomard, Abdelkader Namane, Emmanuelle Permal, Gwenael Badis, Alain Jacquier, Micheline Fromont-Racine
PLoS One. 2023; 18(11): e0293228. Published online 2023 Nov 27. doi: 10.1371/journal.pone.0293228
PMCID:
PMC10681259
AbstractArticlePDF–2.5M
6.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
7.
Decoding of the ubiquitin code for clearance of colliding ribosomes by the RQT complex
Yoshitaka Matsuo, Takayuki Uchihashi, Toshifumi Inada
Nat Commun. 2023; 14: 79. Published online 2023 Jan 10. doi: 10.1038/s41467-022-35608-4
PMCID:
PMC9831982
AbstractArticlePDF–2.9M
8.
Distinct elongation stalls during translation are linked with distinct pathways for mRNA degradation
Anthony J Veltri, Karole N D'Orazio, Laura N Lessen, Raphael Loll-Krippleber, Grant W Brown, Rachel Green
eLife. 2022; 11: e76038. Published online 2022 Jul 27. doi: 10.7554/eLife.76038
PMCID:
PMC9352352
AbstractArticlePDF–3.1M
9.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
10.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
11.
Frameshifting at collided ribosomes is modulated by elongation factor eEF3 and by integrated stress response regulators Gcn1 and Gcn20
Lisa Houston, Evan M. Platten, Sara M. Connelly, Jiyu Wang, Elizabeth J. Grayhack
RNA. 2022 Mar; 28(3): 320–339. doi: 10.1261/rna.078964.121
PMCID:
PMC8848926
AbstractArticlePDF–8.4M
12.
A Multi-Perspective Proximity View on the Dynamic Head Region of the Ribosomal 40S Subunit
Kerstin Schmitt, Alina-Andrea Kraft, Oliver Valerius
Int J Mol Sci. 2021 Nov; 22(21): 11653. Published online 2021 Oct 28. doi: 10.3390/ijms222111653
PMCID:
PMC8583833
AbstractArticlePDF–4.2M
13.
Rqc1 and other yeast proteins containing highly positively charged sequences are not targets of the RQC complex
Géssica C. Barros, Rodrigo D. Requião, Rodolfo L. Carneiro, Claudio A. Masuda, Mariana H. Moreira, Silvana Rossetto, Tatiana Domitrovic, Fernando L. Palhano
J Biol Chem. 2021 Jan-Jun; 296: 100586. Published online 2021 Mar 24. doi: 10.1016/j.jbc.2021.100586
PMCID:
PMC8102910
AbstractArticlePDF–3.4M
14.
Structure of Gcn1 bound to stalled and colliding 80S ribosomes
Agnieszka A. Pochopien, Bertrand Beckert, Sergo Kasvandik, Otto Berninghausen, Roland Beckmann, Tanel Tenson, Daniel N. Wilson
Proc Natl Acad Sci U S A. 2021 Apr 6; 118(14): e2022756118. Published online 2021 Mar 31. doi: 10.1073/pnas.2022756118
PMCID:
PMC8040806
AbstractArticlePDF–2.2M
15.
Ribosome-quality control antagonizes the activation of the integrated-stress response on colliding ribosomes
Liewei L. Yan, Hani S. Zaher
Mol Cell. Author manuscript; available in PMC 2022 Feb 4.
Published in final edited form as: Mol Cell. 2021 Feb 4; 81(3): 614–628.e4. Published online 2020 Dec 17. doi: 10.1016/j.molcel.2020.11.033
PMCID:
PMC7867595
AbstractArticlePDF–1.8M
16.
Disome and trisome profiling reveal genome-wide targets of ribosome quality control
Sezen Meydan, Nicholas R. Guydosh
Mol Cell. Author manuscript; available in PMC 2021 Aug 20.
Published in final edited form as: Mol Cell. 2020 Aug 20; 79(4): 588–602.e6. Published online 2020 Jul 1. doi: 10.1016/j.molcel.2020.06.010
PMCID:
PMC7484464
AbstractArticlePDF–2.2M
17.
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone
Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.
Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855
PMCID:
PMC7386433
AbstractArticlePDF–1.0M
18.
Pre-emptive Quality Control of a Misfolded Membrane Protein by Ribosome-Driven Effects
Ramya Lakshminarayan, Ben P. Phillips, Imogen L. Binnian, Natalia Gomez-Navarro, Norberto Escudero-Urquijo, Alan J. Warren, Elizabeth A. Miller
Curr Biol. 2020 Mar 9; 30(5): 854–864.e5. doi: 10.1016/j.cub.2019.12.060
PMCID:
PMC7063571
AbstractArticle
19.
Inverted translational control of eukaryotic gene expression by ribosome collisions
Heungwon Park, Arvind R. Subramaniam
PLoS Biol. 2019 Sep; 17(9): e3000396. Published online 2019 Sep 18. doi: 10.1371/journal.pbio.3000396
PMCID:
PMC6750593
AbstractArticlePDF–2.3M
20.
Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME
Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy
Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317
PMCID:
PMC6648895
AbstractArticlePDF–14M

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