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Items: 1 to 20 of 49

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Global profiling of regulatory elements in the histone benzoylation pathway
Duo Wang, Fuxiang Yan, Ping Wu, Kexue Ge, Muchun Li, Tingting Li, Ying Gao, Chao Peng, Yong Chen
Nat Commun. 2022; 13: 1369. Published online 2022 Mar 16. doi: 10.1038/s41467-022-29057-2
PMCID:
PMC8927147
AbstractArticlePDF–3.3M
5.
14-3-3 Protein Bmh1 triggers short-range compaction of mitotic chromosomes by recruiting sirtuin deacetylase Hst2
Neha Jain, Petra Janning, Heinz Neumann
J Biol Chem. 2021 Jan-Jun; 296: 100078. Published online 2020 Nov 23. doi: 10.1074/jbc.AC120.014758
PMCID:
PMC7948448
AbstractArticlePDF–1.3M
6.
Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions
Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch
Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680
PMCID:
PMC7273177
AbstractArticle
7.
Role of the Cell Asymmetry Apparatus and Ribosome-Associated Chaperones in the Destabilization of a Saccharomyces cerevisiae Prion by Heat Shock
Rebecca L. Howie, Lina Manuela Jay-Garcia, Denis A. Kiktev, Quincy L. Faber, Margaret Murphy, Katherine A. Rees, Numera Sachwani, Yury O. Chernoff
Genetics. 2019 Jul; 212(3): 757–771. Published online 2019 Jun 13. doi: 10.1534/genetics.119.302237
PMCID:
PMC6614889
AbstractArticlePDF–1.6M
8.
A synthetic non-histone substrate to study substrate targeting by the Gcn5 HAT and sirtuin HDACs
Anthony Rössl, Alix Denoncourt, Mong-Shang Lin, Michael Downey
J Biol Chem. 2019 Apr 19; 294(16): 6227–6239. Published online 2019 Feb 25. doi: 10.1074/jbc.RA118.006051
PMCID:
PMC6484106
AbstractArticlePDF–1.7M
9.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
10.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
11.
Centromeres License the Mitotic Condensation of Yeast Chromosome Arms
Tom Kruitwagen, Pierre Chymkowitch, Annina Denoth-Lippuner, Jorrit Enserink, Yves Barral
Cell. 2018 Oct 18; 175(3): 780–795.e15. doi: 10.1016/j.cell.2018.09.012
PMCID:
PMC6197839
AbstractArticle
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
15.
Riches of phenotype computationally extracted from microbial colonies
Tzu-Yu Liu, Anne E. Dodson, Jonathan Terhorst, Yun S. Song, Jasper Rine
Proc Natl Acad Sci U S A. 2016 May 17; 113(20): E2822–E2831. Published online 2016 May 2. doi: 10.1073/pnas.1523295113
PMCID:
PMC4878510
AbstractArticlePDF–2.6M
16.
Physical nature of intermolecular interactions inside Sir2 homolog active site: molecular dynamics and ab initio study
Przemysław Czeleń, Żaneta Czyżnikowska
J Mol Model. 2016; 22: 120. Published online 2016 May 6. doi: 10.1007/s00894-016-2992-2
PMCID:
PMC4859839
AbstractArticlePDF–705K
17.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
18.
Axial contraction and short-range compaction of chromatin synergistically promote mitotic chromosome condensation
Tom Kruitwagen, Annina Denoth-Lippuner, Bryan J Wilkins, Heinz Neumann, Yves Barral
eLife. 2015; 4: e10396. Published online 2015 Nov 28. doi: 10.7554/eLife.10396
PMCID:
PMC4755758
AbstractArticlePDF–2.5M
19.
Biotin starvation causes mitochondrial protein hyperacetylation and partial rescue by the SIRT3-like deacetylase Hst4p
Christian T. Madsen, Kathrine B. Sylvestersen, Clifford Young, Sara C. Larsen, Jon W. Poulsen, Marianne A. Andersen, Eva A. Palmqvist, Martin Hey-Mogensen, Per B. Jensen, Jonas T. Treebak, Michael Lisby, Michael L. Nielsen
Nat Commun. 2015; 6: 7726. Published online 2015 Jul 9. doi: 10.1038/ncomms8726
PMCID:
PMC4510963
AbstractArticlePDF–1.9M
20.
Acetylome Profiling Reveals Overlap in the Regulation of Diverse Processes by Sirtuins, Gcn5, and Esa1
Michael Downey, Jeffrey R. Johnson, Norman E. Davey, Billy W. Newton, Tasha L. Johnson, Shastyn Galaang, Charles A. Seller, Nevan Krogan, David P. Toczyski
Mol Cell Proteomics. 2015 Jan; 14(1): 162–176. Published online 2014 Nov 7. doi: 10.1074/mcp.M114.043141
PMCID:
PMC4288252
AbstractArticlePDF–2.6M

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