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Items: 1 to 20 of 39

1.
An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae
Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori
Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749
PMCID:
PMC11423678
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
4.
MitoStores: chaperone‐controlled protein granules store mitochondrial precursors in the cytosol
Lena Krämer, Niko Dalheimer, Markus Räschle, Zuzana Storchová, Jan Pielage, Felix Boos, Johannes M Herrmann
EMBO J. 2023 Apr; 42(7): e112309. Published online 2023 Jan 27. doi: 10.15252/embj.2022112309
PMCID:
PMC10068336
AbstractArticlePDF–3.9M
5.
ATP synthase interactome analysis identifies a new subunit l as a modulator of permeability transition pore in yeast
Chiranjit Panja, Aneta Wiesyk, Katarzyna Niedźwiecka, Emilia Baranowska, Roza Kucharczyk
Sci Rep. 2023; 13: 3839. Published online 2023 Mar 7. doi: 10.1038/s41598-023-30966-5
PMCID:
PMC9992712
AbstractArticlePDF–8.1M
6.
Elucidation of the interaction proteome of mitochondrial chaperone Hsp78 highlights its role in protein aggregation during heat stress
Witold Jaworek, Marc Sylvester, Giovanna Cenini, Wolfgang Voos
J Biol Chem. 2022 Oct; 298(10): 102494. Published online 2022 Sep 15. doi: 10.1016/j.jbc.2022.102494
PMCID:
PMC9574514
AbstractArticlePDF–1.9M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
NMR structural analysis of the yeast cytochrome c oxidase subunit Cox13 and its interaction with ATP
Shu Zhou, Pontus Pettersson, Markus L. Björck, Hannah Dawitz, Peter Brzezinski, Lena Mäler, Pia Ädelroth
BMC Biol. 2021; 19: 98. Published online 2021 May 10. doi: 10.1186/s12915-021-01036-x
PMCID:
PMC8111780
AbstractArticlePDF–2.9M
9.
Respiratory supercomplexes enhance electron transport by decreasing cytochrome c diffusion distance
Jens Berndtsson, Andreas Kohler, Sorbhi Rathore, Lorena Marin‐Buera, Hannah Dawitz, Jutta Diessl, Verena Kohler, Antoni Barrientos, Sabrina Büttner, Flavia Fontanesi, Martin Ott
EMBO Rep. 2020 Dec 3; 21(12): e51015. Published online 2020 Oct 5. doi: 10.15252/embr.202051015
PMCID:
PMC7726804
AbstractArticlePDF–5.8M
10.
Rcf2 revealed in cryo-EM structures of hypoxic isoforms of mature mitochondrial III-IV supercomplexes
Andrew M. Hartley, Brigitte Meunier, Nikos Pinotsis, Amandine Maréchal
Proc Natl Acad Sci U S A. 2020 Apr 28; 117(17): 9329–9337. Published online 2020 Apr 14. doi: 10.1073/pnas.1920612117
PMCID:
PMC7196821
AbstractArticlePDF–1.6M
11.
A common coupling mechanism for A-type heme-copper oxidases from bacteria to mitochondria
Amandine Maréchal, Jing-Yang Xu, Naho Genko, Andrew M. Hartley, Francis Haraux, Brigitte Meunier, Peter R. Rich
Proc Natl Acad Sci U S A. 2020 Apr 28; 117(17): 9349–9355. Published online 2020 Apr 14. doi: 10.1073/pnas.2001572117
PMCID:
PMC7196763
AbstractArticlePDF–984K
12.
Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker
Karl A. T. Makepeace, Yassene Mohammed, Elena L. Rudashevskaya, Evgeniy V. Petrotchenko, F.-Nora Vögtle, Chris Meisinger, Albert Sickmann, Christoph H. Borchers
Mol Cell Proteomics. 2020 Apr; 19(4): 624–639. Published online 2020 Feb 12. doi: 10.1074/mcp.RA119.001839
PMCID:
PMC7124466
AbstractArticlePDF–7.8M
13.
Structure of yeast cytochrome c oxidase in a supercomplex with cytochrome bc1
Andrew M. Hartley, Natalya Lukoyanova, Yunyi Zhang, Alfredo Cabrera-Orefice, Susanne Arnold, Brigitte Meunier, Nikos Pinotsis, Amandine Maréchal
Nat Struct Mol Biol. Author manuscript; available in PMC 2019 Jun 30.
Published in final edited form as: Nat Struct Mol Biol. 2019 Jan; 26(1): 78–83. Published online 2018 Dec 31. doi: 10.1038/s41594-018-0172-z
PMCID:
PMC6330080
AbstractArticlePDF–2.7M
14.
Recruitment of Cytosolic J-Proteins by TOM Receptors Promotes Mitochondrial Protein Biogenesis
Łukasz Opaliński, Jiyao Song, Chantal Priesnitz, Lena-Sophie Wenz, Silke Oeljeklaus, Bettina Warscheid, Nikolaus Pfanner, Thomas Becker
Cell Rep. 2018 Nov 20; 25(8): 2036–2043.e5. Published online 2018 Nov 20. doi: 10.1016/j.celrep.2018.10.083
PMCID:
PMC6280124
AbstractArticle
15.
Cox2p of yeast cytochrome oxidase assembles as a stand-alone subunit with the Cox1p and Cox3p modules
Leticia Veloso R. Franco, Chen-Hsien Su, Gavin P. McStay, George J. Yu, Alexander Tzagoloff
J Biol Chem. 2018 Oct 26; 293(43): 16899–16911. Published online 2018 Sep 17. doi: 10.1074/jbc.RA118.004138
PMCID:
PMC6204888
AbstractArticlePDF–4.0M
16.
Cox15 interacts with the cytochrome bc1 dimer within respiratory supercomplexes as well as in the absence of cytochrome c oxidase
Emily J. Herwaldt, Elise D. Rivett, Antoineen J. White, Eric L. Hegg
J Biol Chem. 2018 Oct 19; 293(42): 16426–16439. Published online 2018 Sep 4. doi: 10.1074/jbc.RA118.002496
PMCID:
PMC6200925
AbstractArticlePDF–2.4M
17.
Regulation of cytochrome c oxidase activity by modulation of the catalytic site
Jacob Schäfer, Hannah Dawitz, Martin Ott, Pia Ädelroth, Peter Brzezinski
Sci Rep. 2018; 8: 11397. Published online 2018 Jul 30. doi: 10.1038/s41598-018-29567-4
PMCID:
PMC6065377
AbstractArticlePDF–1.4M
18.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M

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