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Select item 114236781.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Article PDF–1.7M

Select item 112945832.

Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast

Johanna Kociemba, Andreas Christ Sølvsten Jørgensen, Nika Tadić, Anthony Harris, Theodora Sideri, Wei Yee Chan, Fairouz Ibrahim, Elçin Ünal, Mark Skehel, Vahid Shahrezaei, Orlando Argüello-Miranda, Folkert Jacobus van Werven

EMBO J. 2024 Aug; 43(15): 3256–3286. Published online 2024 Jun 17. doi: 10.1038/s44318-024-00149-7

PMCID:: PMC11294583

Article PDF–5.1M

Select item 110646593.

Cytoplasmic redox imbalance in the thioredoxin system activates Hsf1 and results in hyperaccumulation of the sequestrase Hsp42 with misfolded proteins

Davi Goncalves, Duong Long Duy, Sara Peffer, Kevin A. Morano

Mol Biol Cell. 2024 Apr 1; 35(4): ar53. Published online 2024 Mar 5. doi: 10.1091/mbc.E23-07-0296

PMCID:: PMC11064659

Article PDF–1.6M

Select item 108724774.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Article PDF–1.7M

Select item 108687275.

Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates

Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus

Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.

Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2

PMCID:: PMC10868727

Article PDF–7.0M

Select item 107988586.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Article PDF–6.4M

Select item 107001387.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Article PDF–20M

Select item 99927128.

ATP synthase interactome analysis identifies a new subunit l as a modulator of permeability transition pore in yeast

Chiranjit Panja, Aneta Wiesyk, Katarzyna Niedźwiecka, Emilia Baranowska, Roza Kucharczyk

Sci Rep. 2023; 13: 3839. Published online 2023 Mar 7. doi: 10.1038/s41598-023-30966-5

PMCID:: PMC9992712

Article PDF–8.1M

Select item 98363489.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Article PDF–857K

Select item 920981110.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Article PDF–818K

Select item 851195011.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Article PDF–3.1M

Select item 830064712.

Effects of Serine or Threonine in the Active Site of Typical 2-Cys Prx on Hyperoxidation Susceptibility and on Chaperone Activity

Carlos A. Tairum, Melina Cardoso Santos, Carlos Alexandre Breyer, Ana Laura Pires de Oliveira, Vitoria Isabela Montanhero Cabrera, Guilherme Toledo-Silva, Gustavo Maruyama Mori, Marcos Hikari Toyama, Luis Eduardo Soares Netto, Marcos Antonio de Oliveira

Antioxidants (Basel) 2021 Jul; 10(7): 1032. Published online 2021 Jun 25. doi: 10.3390/antiox10071032

PMCID:: PMC8300647

Article PDF–4.7M

Select item 829842413.

Harmful R-loops are prevented via different cell cycle-specific mechanisms

Marta San Martin-Alonso, María E. Soler-Oliva, María García-Rubio, Tatiana García-Muse, Andrés Aguilera

Nat Commun. 2021; 12: 4451. Published online 2021 Jul 22. doi: 10.1038/s41467-021-24737-x

PMCID:: PMC8298424

Article PDF–2.2M

Select item 760014514.

Wine Yeast Peroxiredoxin TSA1 Plays a Role in Growth, Stress Response and Trehalose Metabolism in Biomass Propagation

Víctor Garrigós, Cecilia Picazo, Emilia Matallana, Agustín Aranda

Microorganisms. 2020 Oct; 8(10): 1537. Published online 2020 Oct 6. doi: 10.3390/microorganisms8101537

PMCID:: PMC7600145

Article PDF–2.2M

Select item 756021615.

AP‐3 vesicle uncoating occurs after HOPS‐dependent vacuole tethering

Jannis Schoppe, Muriel Mari, Erdal Yavavli, Kathrin Auffarth, Margarita Cabrera, Stefan Walter, Florian Fröhlich, Christian Ungermann

EMBO J. 2020 Oct 15; 39(20): e105117. Published online 2020 Aug 25. doi: 10.15252/embj.2020105117

PMCID:: PMC7560216

Article PDF–3.6M

Select item 739260916.

Peroxiredoxin promotes longevity and H₂O₂-resistance in yeast through redox-modulation of protein kinase A

Friederike Roger, Cecilia Picazo, Wolfgang Reiter, Marouane Libiad, Chikako Asami, Sarah Hanzén, Chunxia Gao, Gilles Lagniel, Niek Welkenhuysen, Jean Labarre, Thomas Nyström, Morten Grøtli, Markus Hartl, Michel B Toledano, Mikael Molin

eLife. 2020; 9: e60346. Published online 2020 Jul 14. doi: 10.7554/eLife.60346

PMCID:: PMC7392609

Article PDF–3.7M

Select item 728698717.

One cysteine is enough: A monothiol Grx can functionally replace all cytosolic Trx and dithiol Grx

Jannik Zimmermann, Julian Oestreicher, Steffen Hess, Johannes M. Herrmann, Marcel Deponte, Bruce Morgan

Redox Biol. 2020 Sep; 36: 101598. Published online 2020 May 31. doi: 10.1016/j.redox.2020.101598

PMCID:: PMC7286987

Article PDF–2.3M

Select item 703628418.

Aromatic Residues at the Dimer–Dimer Interface in the Peroxiredoxin Tsa1 Facilitate Decamer Formation and Biological Function

Matthew A. Loberg, Jennifer E. Hurtig, Aaron H. Graff, Kristin M. Allan, John A. Buchan, Matthew K. Spencer, Joseph E. Kelly, Jill E. Clodfelter, Kevin A. Morano, W. Todd Lowther, James D. West

Chem Res Toxicol. Author manuscript; available in PMC 2020 Feb 23.

Published in final edited form as: Chem Res Toxicol. 2019 Mar 18; 32(3): 474–483. Published online 2019 Feb 11. doi: 10.1021/acs.chemrestox.8b00346

PMCID:: PMC7036284

Article PDF–1.9M

Select item 701626419.

Redox requirements for ubiquitin-like urmylation of Ahp1, a 2-Cys peroxiredoxin from yeast

Cindy Brachmann, Lars Kaduhr, André Jüdes, Keerthiraju Ethiraju Ravichandran, James D. West, Sebastian Glatt, Raffael Schaffrath

Redox Biol. 2020 Feb; 30: 101438. Published online 2020 Jan 22. doi: 10.1016/j.redox.2020.101438

PMCID:: PMC7016264

Article PDF–2.4M

Select item 668908620.

The Hsp90 isoforms from S. cerevisiae differ in structure, function and client range

Hannah Girstmair, Franziska Tippel, Abraham Lopez, Katarzyna Tych, Frank Stein, Per Haberkant, Philipp Werner Norbert Schmid, Dominic Helm, Matthias Rief, Michael Sattler, Johannes Buchner

Nat Commun. 2019; 10: 3626. Published online 2019 Aug 9. doi: 10.1038/s41467-019-11518-w