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Items: 20

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
A functional link between NAD+ homeostasis and N-terminal protein acetylation in Saccharomyces cerevisiae
Trevor Croft, Christol James Theoga Raj, Michelle Salemi, Brett S. Phinney, Su-Ju Lin
J Biol Chem. 2018 Feb 23; 293(8): 2927–2938. Published online 2018 Jan 9. doi: 10.1074/jbc.M117.807214
PMCID:
PMC5827443
AbstractArticlePDF–1.7M
4.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
5.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
6.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
7.
Nicotinamide Suppresses the DNA Damage Sensitivity of Saccharomyces cerevisiae Independently of Sirtuin Deacetylases
Anthony Rössl, Amanda Bentley-DeSousa, Yi-Chieh Tseng, Christine Nwosu, Michael Downey
Genetics. 2016 Oct; 204(2): 569–579. Published online 2016 Aug 15. doi: 10.1534/genetics.116.193524
PMCID:
PMC5068847
AbstractArticlePDF–7.1M
8.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
9.
Bulk RNA degradation by nitrogen starvation-induced autophagy in yeast
Hanghang Huang, Tomoko Kawamata, Tetsuro Horie, Hiroshi Tsugawa, Yasumune Nakayama, Yoshinori Ohsumi, Eiichiro Fukusaki
EMBO J. 2015 Jan 13; 34(2): 154–168. Published online 2014 Dec 2. doi: 10.15252/embj.201489083
PMCID:
PMC4337068
AbstractArticlePDF–1.2M
10.
Quantification of Protein Copy Number in Yeast: The NAD+ Metabolome
Szu-Chieh Mei, Charles Brenner
PLoS One. 2014; 9(9): e106496. Published online 2014 Sep 4. doi: 10.1371/journal.pone.0106496
PMCID:
PMC4154715
AbstractArticlePDF–2.0M
11.
Nucleotide degradation and ribose salvage in yeast
Yi-Fan Xu, Fabien Létisse, Farnaz Absalan, Wenyun Lu, Ekaterina Kuznetsova, Greg Brown, Amy A Caudy, Alexander F Yakunin, James R Broach, Joshua D Rabinowitz
Mol Syst Biol. 2013; 9: 665. Published online 2013 May 14. doi: 10.1038/msb.2013.21
PMCID:
PMC4039369
AbstractArticlePDF–1.8M
12.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
13.
Heterozygous Yeast Deletion Collection Screens Reveal Essential Targets of Hsp90
Eric A. Franzosa, Véronique Albanèse, Judith Frydman, Yu Xia, Amie J. McClellan
PLoS One. 2011; 6(11): e28211. Published online 2011 Nov 30. doi: 10.1371/journal.pone.0028211
PMCID:
PMC3227642
AbstractArticlePDF–1.7M
14.
An integrated approach to characterize genetic interaction networks in yeast metabolism
Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp
Nat Genet. Author manuscript; available in PMC 2012 Jan 1.
Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846
PMCID:
PMC3125439
AbstractArticlePDF–2.5M
15.
The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components
Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter
PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057
PMCID:
PMC3084213
AbstractArticlePDF–710K
16.
Assimilation of Endogenous Nicotinamide Riboside Is Essential for Calorie Restriction-mediated Life Span Extension in Saccharomyces cerevisiae
Shu-Ping Lu, Michiko Kato, Su-Ju Lin
J Biol Chem. 2009 Jun 19; 284(25): 17110–17119. Published online 2009 May 5. doi: 10.1074/jbc.M109.004010
PMCID:
PMC2719349
AbstractArticlePDF–787K
17.
Uridine-Ribohydrolase Is a Key Regulator in the Uridine Degradation Pathway of Arabidopsis
Benjamin Jung, Martin Flörchinger, Hans-Henning Kunz, Michaela Traub, Ruth Wartenberg, Wolfgang Jeblick, H. Ekkehard Neuhaus, Torsten Möhlmann
Plant Cell. 2009 Mar; 21(3): 876–891. doi: 10.1105/tpc.108.062612
PMCID:
PMC2671717
AbstractArticlePDF–1.3M
18.
Nicotinamide Riboside and Nicotinic Acid Riboside Salvage in Fungi and Mammals: QUANTITATIVE BASIS FOR Urh1 AND PURINE NUCLEOSIDE PHOSPHORYLASE FUNCTION IN NAD+METABOLISM
Peter Belenky, Kathryn C. Christensen, Francesca Gazzaniga, Alexandre A. Pletnev, Charles Brenner
J Biol Chem. 2009 Jan 2; 284(1): 158–164. doi: 10.1074/jbc.M807976200
Correction in:
J Biol Chem. 2009 Mar 20; 284(12): 8208.
PMCID:
PMC2610512
AbstractArticlePDF–409K
19.
Nicotinamide Riboside Kinase Structures Reveal New Pathways to NAD+
Wolfram Tempel, Wael M Rabeh, Katrina L Bogan, Peter Belenky, Marzena Wojcik, Heather F Seidle, Lyudmila Nedyalkova, Tianle Yang, Anthony A Sauve, Hee-Won Park, Charles Brenner
PLoS Biol. 2007 Oct; 5(10): e263. Published online 2007 Oct 2. doi: 10.1371/journal.pbio.0050263
PMCID:
PMC1994991
AbstractArticlePDF–666K
20.
Saccharomyces cerevisiae URH1 (Encoding Uridine-Cytidine N-Ribohydrolase): Functional Complementation by a Nucleoside Hydrolase from a Protozoan Parasite and by a Mammalian Uridine Phosphorylase
Rudolf Mitterbauer, Thomas Karl, Gerhard Adam
Appl Environ Microbiol. 2002 Mar; 68(3): 1336–1343. doi: 10.1128/AEM.68.3.1336-1343.2002
PMCID:
PMC123776
AbstractArticlePDF–590K

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