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Items: 1 to 20 of 43

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060
PMCID:
PMC10292210
AbstractArticlePDF–5.9M
4.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Yeast Nst1 is a novel component of P-bodies and is a specific suppressor of proteasome base assembly defects
Chin Leng Cheng, Michael K. Wong, Mark Hochstrasser
Mol Biol Cell. 2021 Oct 1; 32(20): ar6. doi: 10.1091/mbc.E21-04-0178
PMCID:
PMC8684758
AbstractArticlePDF–2.7M
7.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
8.
Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker
Karl A. T. Makepeace, Yassene Mohammed, Elena L. Rudashevskaya, Evgeniy V. Petrotchenko, F.-Nora Vögtle, Chris Meisinger, Albert Sickmann, Christoph H. Borchers
Mol Cell Proteomics. 2020 Apr; 19(4): 624–639. Published online 2020 Feb 12. doi: 10.1074/mcp.RA119.001839
PMCID:
PMC7124466
AbstractArticlePDF–7.8M
9.
Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME
Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy
Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317
PMCID:
PMC6648895
AbstractArticlePDF–14M
10.
The ribosome receptors Mrx15 and Mba1 jointly organize cotranslational insertion and protein biogenesis in mitochondria
Braulio Vargas Möller-Hergt, Andreas Carlström, Katharina Stephan, Axel Imhof, Martin Ott
Mol Biol Cell. 2018 Oct 1; 29(20): 2386–2396. doi: 10.1091/mbc.E18-04-0227
PMCID:
PMC6233058
AbstractArticlePDF–2.0M
11.
Cbp3 and Cbp6 are dispensable for synthesis regulation of cytochrome b in yeast mitochondria
Aldo E. García-Guerrero, Yolanda Camacho-Villasana, Angélica Zamudio-Ochoa, Dennis R. Winge, Xochitl Pérez-Martínez
J Biol Chem. 2018 Apr 13; 293(15): 5585–5599. Published online 2018 Feb 23. doi: 10.1074/jbc.RA117.000547
PMCID:
PMC5900770
AbstractArticlePDF–2.0M
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly
Miriam Sturm, Jingdong Cheng, Jochen Baßler, Roland Beckmann, Ed Hurt
Nat Commun. 2017; 8: 2213. Published online 2017 Dec 20. doi: 10.1038/s41467-017-02199-4
PMCID:
PMC5738357
AbstractArticlePDF–3.1M
14.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
15.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
16.
The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability
Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx
PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835
PMCID:
PMC5484544
AbstractArticlePDF–14M
17.
The structure of the yeast mitochondrial ribosome
Nirupa Desai, Alan Brown, Alexey Amunts, V. Ramakrishnan
Science. Author manuscript; available in PMC 2017 Aug 3.
Published in final edited form as: Science. 2017 Feb 3; 355(6324): 528–531. doi: 10.1126/science.aal2415
PMCID:
PMC5295643
AbstractArticlePDF–2.0M
18.
Ribosome-Associated Mba1 Escorts Cox2 from Insertion Machinery to Maturing Assembly Intermediates
Isotta Lorenzi, Silke Oeljeklaus, Christin Ronsör, Bettina Bareth, Bettina Warscheid, Peter Rehling, Sven Dennerlein
Mol Cell Biol. 2016 Nov 15; 36(22): 2782–2793. Prepublished online 2016 Aug 22. Published online 2016 Oct 28. doi: 10.1128/MCB.00361-16
PMCID:
PMC5086520
AbstractArticlePDF–2.4M
19.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
20.
Oms1 associates with cytochrome c oxidase assembly intermediates to stabilize newly synthesized Cox1
Bettina Bareth, Miroslav Nikolov, Isotta Lorenzi, Markus Hildenbeutel, David U. Mick, Christin Helbig, Henning Urlaub, Martin Ott, Peter Rehling, Sven Dennerlein
Mol Biol Cell. 2016 May 15; 27(10): 1570–1580. doi: 10.1091/mbc.E15-12-0811
PMCID:
PMC4865315
AbstractArticlePDF–2.2M

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