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Select item 102333681.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 92098112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 81463363.

The Mechanisms of Thiosulfate Toxicity against Saccharomyces cerevisiae

Zhigang Chen, Yongzhen Xia, Huaiwei Liu, Honglei Liu, Luying Xun

Antioxidants (Basel) 2021 May; 10(5): 646. Published online 2021 Apr 22. doi: 10.3390/antiox10050646

PMCID:: PMC8146336

Abstract Article PDF–1.9M

Select item 77187514.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 66157105.

The nucleotide sequence of Saccharomyces cerevisiae chromosome XII

M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel

Nature. Author manuscript; available in PMC 2019 Jul 9.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.

PMCID:: PMC6615710

Abstract Article PDF–424K

Select item 62101006.

The Complete Pathway for Thiosulfate Utilization in Saccharomyces cerevisiae

Zhigang Chen, Xi Zhang, Huanjie Li, Huaiwei Liu, Yongzhen Xia, Luying Xun

Appl Environ Microbiol. 2018 Nov 15; 84(22): e01241-18. Prepublished online 2018 Sep 14. Published online 2018 Oct 30. doi: 10.1128/AEM.01241-18

PMCID:: PMC6210100

Abstract Article PDF–966K

Select item 61169497.

A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A

Sultan Ciftci-Yilmaz, Wei-Chun Au, Prashant K. Mishra, Jessica R. Eisenstatt, Joy Chang, Anthony R. Dawson, Iris Zhu, Mahfuzur Rahman, Sven Bilke, Michael Costanzo, Anastasia Baryshnikova, Chad L. Myers, Paul S. Meltzer, David Landsman, Richard E. Baker, Charles Boone, Munira A. Basrai

Genetics. 2018 Sep; 210(1): 203–218. Published online 2018 Jul 16. doi: 10.1534/genetics.118.301305

PMCID:: PMC6116949

Abstract Article PDF–2.1M

Select item 56618858.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56002549.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 530881710.

Differential paralog divergence modulates genome evolution across yeast species

Monica R. Sanchez, Aaron W. Miller, Ivan Liachko, Anna B. Sunshine, Bryony Lynch, Mei Huang, Erica Alcantara, Christopher G. DeSevo, Dave A. Pai, Cheryl M. Tucker, Margaret L. Hoang, Maitreya J. Dunham

PLoS Genet. 2017 Feb; 13(2): e1006585. Published online 2017 Feb 14. doi: 10.1371/journal.pgen.1006585

PMCID:: PMC5308817

Abstract Article PDF–3.5M

Select item 530382111.

Major sulfonate transporter Soa1 in Saccharomyces cerevisiae and considerable substrate diversity in its fungal family

Sylvester Holt, Harish Kankipati, Stijn De Graeve, Griet Van Zeebroeck, Maria R. Foulquié-Moreno, Stinus Lindgreen, Johan M. Thevelein

Nat Commun. 2017; 8: 14247. Published online 2017 Feb 6. doi: 10.1038/ncomms14247

PMCID:: PMC5303821

Abstract Article PDF–1.4M

Select item 520434812.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 469352513.

Ubiquitin‐Activated Interaction Traps (UBAITs) identify E3 ligase binding partners

Hazel F O'Connor, Nancy Lyon, Justin W Leung, Poonam Agarwal, Caleb D Swaim, Kyle M Miller, Jon M Huibregtse

EMBO Rep. 2015 Dec; 16(12): 1699–1712. Published online 2015 Oct 27. doi: 10.15252/embr.201540620

PMCID:: PMC4693525

Abstract Article PDF–693K

Select item 461603914.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 440035215.

Sul1 and Sul2 Sulfate Transceptors Signal to Protein Kinase A upon Exit of Sulfur Starvation

Harish Nag Kankipati, Marta Rubio-Texeira, Dries Castermans, George Diallinas, Johan M. Thevelein

J Biol Chem. 2015 Apr 17; 290(16): 10430–10446. Published online 2015 Feb 27. doi: 10.1074/jbc.M114.629022

PMCID:: PMC4400352

Abstract Article PDF–3.9M

Select item 387398116.

Whi3, an S. cerevisiae RNA-Binding Protein, Is a Component of Stress Granules That Regulates Levels of Its Target mRNAs

Kristen J. Holmes, Daniel M. Klass, Evan L. Guiney, Martha S. Cyert

PLoS One. 2013; 8(12): e84060. Published online 2013 Dec 27. doi: 10.1371/journal.pone.0084060

PMCID:: PMC3873981

Abstract Article PDF–11M

Select item 328377017.

Inactivation of Saccharomyces cerevisiae Sulfate Transporter Sul2p: Use It and Lose It

Michael L. Jennings, Jian Cui

Biophys J. 2012 Feb 22; 102(4): 768–776. doi: 10.1016/j.bpj.2012.01.005

PMCID:: PMC3283770

Abstract Article PDF–467K

Select item 312543918.

An integrated approach to characterize genetic interaction networks in yeast metabolism

Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp

Nat Genet. Author manuscript; available in PMC 2012 Jan 1.

Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846

PMCID:: PMC3125439

Abstract Article PDF–2.5M

Select item 291574519.

Binding of Cysteine Synthase to the STAS Domain of Sulfate Transporter and Its Regulatory Consequences

Nakako Shibagaki, Arthur R. Grossman

J Biol Chem. 2010 Aug 6; 285(32): 25094–25102. Published online 2010 Jun 7. doi: 10.1074/jbc.M110.126888

PMCID:: PMC2915745

Abstract Article PDF–908K

Select item 240923420.

Association of yeast Upf1p with direct substrates of the NMD pathway

Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson

Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105

PMCID:: PMC2409234

Abstract Article PDF–864K

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