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Items: 1 to 20 of 45

1.
Receptor-mediated cargo hitchhiking on bulk autophagy
Eigo Takeda, Takahiro Isoda, Sachiko Hosokawa, Yu Oikawa, Shukun Hotta-Ren, Alexander I May, Yoshinori Ohsumi
EMBO J. 2024 Aug; 43(15): 3116–3140. Published online 2024 May 16. doi: 10.1038/s44318-024-00091-8
PMCID:
PMC11294605
AbstractArticlePDF–5.6M
2.
Restricted glycolysis is a primary cause of the reduced growth rate of zinc-deficient yeast cells
Colin W. MacDiarmid, Janet Taggart, Michael Kubisiak, David J. Eide
J Biol Chem. 2024 Apr; 300(4): 107147. Published online 2024 Mar 7. doi: 10.1016/j.jbc.2024.107147
PMCID:
PMC11001634
AbstractArticlePDF–2.2M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Effects of Serine or Threonine in the Active Site of Typical 2-Cys Prx on Hyperoxidation Susceptibility and on Chaperone Activity
Carlos A. Tairum, Melina Cardoso Santos, Carlos Alexandre Breyer, Ana Laura Pires de Oliveira, Vitoria Isabela Montanhero Cabrera, Guilherme Toledo-Silva, Gustavo Maruyama Mori, Marcos Hikari Toyama, Luis Eduardo Soares Netto, Marcos Antonio de Oliveira
Antioxidants (Basel) 2021 Jul; 10(7): 1032. Published online 2021 Jun 25. doi: 10.3390/antiox10071032
PMCID:
PMC8300647
AbstractArticlePDF–4.7M
7.
Aromatic Residues at the Dimer–Dimer Interface in the Peroxiredoxin Tsa1 Facilitate Decamer Formation and Biological Function
Matthew A. Loberg, Jennifer E. Hurtig, Aaron H. Graff, Kristin M. Allan, John A. Buchan, Matthew K. Spencer, Joseph E. Kelly, Jill E. Clodfelter, Kevin A. Morano, W. Todd Lowther, James D. West
Chem Res Toxicol. Author manuscript; available in PMC 2020 Feb 23.
Published in final edited form as: Chem Res Toxicol. 2019 Mar 18; 32(3): 474–483. Published online 2019 Feb 11. doi: 10.1021/acs.chemrestox.8b00346
PMCID:
PMC7036284
AbstractArticlePDF–1.9M
8.
Hyperoxidation of mitochondrial peroxiredoxin limits H2O2‐induced cell death in yeast
Gaetano Calabrese, Esra Peker, Prince Saforo Amponsah, Michaela Nicole Hoehne, Trine Riemer, Marie Mai, Gerd Patrick Bienert, Marcel Deponte, Bruce Morgan, Jan Riemer
EMBO J. 2019 Sep 16; 38(18): e101552. Published online 2019 Aug 7. doi: 10.15252/embj.2019101552
PMCID:
PMC6745495
AbstractArticlePDF–3.4M
9.
The Hsp90 isoforms from S. cerevisiae differ in structure, function and client range
Hannah Girstmair, Franziska Tippel, Abraham Lopez, Katarzyna Tych, Frank Stein, Per Haberkant, Philipp Werner Norbert Schmid, Dominic Helm, Matthias Rief, Michael Sattler, Johannes Buchner
Nat Commun. 2019; 10: 3626. Published online 2019 Aug 9. doi: 10.1038/s41467-019-11518-w
PMCID:
PMC6689086
AbstractArticlePDF–2.3M
10.
Endoplasmic reticulum (ER) stress–induced reactive oxygen species (ROS) are detrimental for the fitness of a thioredoxin reductase mutant
Paraskevi Kritsiligkou, Jonathan D. Rand, Alan J. Weids, Ximeng Wang, Chris J. Kershaw, Chris M. Grant
J Biol Chem. 2018 Aug 3; 293(31): 11984–11995. Published online 2018 Jun 5. doi: 10.1074/jbc.RA118.001824
PMCID:
PMC6078444
AbstractArticlePDF–1.8M
11.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
12.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
13.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
14.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
15.
Nonlinear feedback drives homeostatic plasticity in H2O2 stress response
Youlian Goulev, Sandrine Morlot, Audrey Matifas, Bo Huang, Mikael Molin, Michel B Toledano, Gilles Charvin
eLife. 2017; 6: e23971. Published online 2017 Apr 18. doi: 10.7554/eLife.23971
PMCID:
PMC5438251
AbstractArticlePDF–4.6M
16.
Disrupting the cortical actin cytoskeleton points to two distinct mechanisms of yeast [PSI+] prion formation
Shaun H. Speldewinde, Victoria A. Doronina, Mick F. Tuite, Chris M. Grant
PLoS Genet. 2017 Apr; 13(4): e1006708. Published online 2017 Apr 3. doi: 10.1371/journal.pgen.1006708
PMCID:
PMC5393896
AbstractArticlePDF–3.6M
17.
Trapping Redox Partnerships in Oxidant-Sensitive Proteins with a Small, Thiol-Reactive Cross-Linker
Kristin M. Allan, Matthew A. Loberg, Juliet Chepngeno, Jennifer E. Hurtig, Susmit Tripathi, Min Goo Kang, Jonathan K. Allotey, Afton H. Widdershins, Jennifer M. Pilat, Herbert J. Sizek, Wesley J. Murphy, Matthew R. Naticchia, Joseph B. David, Kevin A. Morano, James D. West
Free Radic Biol Med. Author manuscript; available in PMC 2017 Dec 1.
Published in final edited form as: Free Radic Biol Med. 2016 Dec; 101: 356–366. Published online 2016 Nov 2. doi: 10.1016/j.freeradbiomed.2016.10.506
PMCID:
PMC5154803
AbstractArticlePDF–1.1M
18.
Redox-dependent Regulation of Gluconeogenesis by a Novel Mechanism Mediated by a Peroxidatic Cysteine of Peroxiredoxin
Hayato Irokawa, Tsuyoshi Tachibana, Toshihiko Watanabe, Yuka Matsuyama, Hozumi Motohashi, Ayako Ogasawara, Kenta Iwai, Akira Naganuma, Shusuke Kuge
Sci Rep. 2016; 6: 33536. Published online 2016 Sep 16. doi: 10.1038/srep33536
PMCID:
PMC5025857
AbstractArticlePDF–2.7M
19.
Catalytic Thr or Ser Residue Modulates Structural Switches in 2-Cys Peroxiredoxin by Distinct Mechanisms
Carlos A. Tairum, Melina Cardoso Santos, Carlos A. Breyer, R. Ryan Geyer, Cecilia J. Nieves, Stephanie Portillo-Ledesma, Gerardo Ferrer-Sueta, José Carlos Toledo, Jr., Marcos H. Toyama, Ohara Augusto, Luis E. S. Netto, Marcos A. de Oliveira
Sci Rep. 2016; 6: 33133. Published online 2016 Sep 15. doi: 10.1038/srep33133
PMCID:
PMC5024103
AbstractArticlePDF–1.3M
20.
Chromosome-Specific and Global Effects of Aneuploidy in Saccharomyces cerevisiae
Stacie E. Dodgson, Sharon Kim, Michael Costanzo, Anastasia Baryshnikova, Darcy L. Morse, Chris A. Kaiser, Charles Boone, Angelika Amon
Genetics. 2016 Apr; 202(4): 1395–1409. Published online 2016 Jan 29. doi: 10.1534/genetics.115.185660
PMCID:
PMC4905547
AbstractArticlePDF–4.0M

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