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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 108687272.

Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates

Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus

Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.

Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2

PMCID:: PMC10868727

Abstract Article PDF–7.0M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333684.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 96733525.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 95643206.

Hmo1 Protein Affects the Nucleosome Structure and Supports the Nucleosome Reorganization Activity of Yeast FACT

Daria K. Malinina, Anastasiia L. Sivkina, Anna N. Korovina, Laura L. McCullough, Tim Formosa, Mikhail P. Kirpichnikov, Vasily M. Studitsky, Alexey V. Feofanov

Cells. 2022 Oct; 11(19): 2931. Published online 2022 Sep 20. doi: 10.3390/cells11192931

PMCID:: PMC9564320

Abstract Article PDF–2.6M

Select item 95260747.

Suppressor mutations that make the essential transcription factor Spn1/Iws1 dispensable in Saccharomyces cerevisiae

Francheska López-Rivera, James Chuang, Dan Spatt, Rajaraman Gopalakrishnan, Fred Winston

Genetics. 2022 Oct; 222(2): iyac125. Published online 2022 Aug 17. doi: 10.1093/genetics/iyac125

PMCID:: PMC9526074

Abstract Article PDF–1.0M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 88865319.

Spt5 histone binding activity preserves chromatin during transcription by RNA polymerase II

Cecile Evrin, Albert Serra‐Cardona, Shoufu Duan, Progya P Mukherjee, Zhiguo Zhang, Karim P M Labib

EMBO J. 2022 Mar 1; 41(5): e109783. Published online 2022 Feb 1. doi: 10.15252/embj.2021109783

PMCID:: PMC8886531

Abstract Article PDF–1.4M

Select item 886061010.

The fork protection complex recruits FACT to reorganize nucleosomes during replication

Barbara Safaric, Erika Chacin, Matthias J Scherr, Lional Rajappa, Christian Gebhardt, Christoph F Kurat, Thorben Cordes, Karl E Duderstadt

Nucleic Acids Res. 2022 Feb 22; 50(3): 1317–1334. Published online 2022 Jan 21. doi: 10.1093/nar/gkac005

PMCID:: PMC8860610

Abstract Article PDF–5.7M

Select item 877308011.

Genome-Wide Regulations of the Preinitiation Complex Formation and Elongating RNA Polymerase II by an E3 Ubiquitin Ligase, San1

Priyanka Barman, Rwik Sen, Amala Kaja, Jannatul Ferdoush, Shalini Guha, Chhabi K. Govind, Sukesh R. Bhaumik

Mol Cell Biol. 2022 Jan; 42(1): e00368-21. Prepublished online 2021 Oct 18. Published online 2022 Jan 20. doi: 10.1128/MCB.00368-21

PMCID:: PMC8773080

Abstract Article PDF–3.7M

Select item 874879412.

Electron microscopy analysis of ATP-independent nucleosome unfolding by FACT

Anastasiia L. Sivkina, Maria G. Karlova, Maria E. Valieva, Laura L. McCullough, Timothy Formosa, Alexey K. Shaytan, Alexey V. Feofanov, Mikhail P. Kirpichnikov, Olga S. Sokolova, Vasily M. Studitsky

Commun Biol. 2022; 5: 2. Published online 2022 Jan 10. doi: 10.1038/s42003-021-02948-8

PMCID:: PMC8748794

Abstract Article PDF–1.3M

Select item 857106313.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 851195014.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 849296115.

Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier

Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor

Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755

PMCID:: PMC8492961

Abstract Article

Select item 819177516.

FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation

He Leng, Shaofeng Liu, Yang Lei, Yuantao Tang, Shijia Gu, Jiazhi Hu, She Chen, Jianxun Feng, Qing Li

Nucleic Acids Res. 2021 Jun 4; 49(10): 5502–5519. Published online 2021 May 8. doi: 10.1093/nar/gkab312

PMCID:: PMC8191775

Abstract Article PDF–3.0M

Select item 809411717.

SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase

Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston

J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130

PMCID:: PMC8094117

Abstract Article PDF–8.1M

Select item 809198118.

Essential histone chaperones collaborate to regulate transcription and chromatin integrity

Olga Viktorovskaya, James Chuang, Dhawal Jain, Natalia I. Reim, Francheska López-Rivera, Magdalena Murawska, Dan Spatt, L. Stirling Churchman, Peter J. Park, Fred Winston

Genes Dev. 2021 May 1; 35(9-10): 698–712. doi: 10.1101/gad.348431.121