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    Items: 1 to 20 of 40

    1.
    Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
    Michael J. O’Brien, Athar Ansari
    Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
    Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
    PMCID:
    PMC10872477
    ArticlePDF–1.7M
    2.
    The social and structural architecture of the yeast protein interactome
    André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
    Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
    PMCID:
    PMC10700138
    ArticlePDF–20M
    3.
    Transient septin sumoylation steers a Fir1-Skt5 protein complex between the split septin ring
    Judith Müller, Monique Furlan, David Settele, Benjamin Grupp, Nils Johnsson
    J Cell Biol. 2024 Jan 1; 223(1): e202301027. Published online 2023 Nov 8. doi: 10.1083/jcb.202301027
    PMCID:
    PMC10631487
    ArticlePDF–6.0M
    4.
    The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
    Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
    Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
    Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
    PMCID:
    PMC10297700
    ArticlePDF–2.0M
    5.
    Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
    Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
    Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
    PMCID:
    PMC10235086
    ArticlePDF–2.6M
    6.
    New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
    Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
    Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
    PMCID:
    PMC9209811
    ArticlePDF–818K
    7.
    Identification of 14-3-3 Proteins, Polo kinase, and RNA-binding protein Pes4 as Key Regulators of Meiotic Commitment in Budding Yeast
    Janardan N. Gavade, Chris M. Puccia, S. Grace Herod, Jonathan C. Trinidad, Luke E. Berchowitz, Soni Lacefield
    Curr Biol. Author manuscript; available in PMC 2023 Apr 11.
    Published in final edited form as: Curr Biol. 2022 Apr 11; 32(7): 1534–1547.e9. Published online 2022 Mar 2. doi: 10.1016/j.cub.2022.02.022
    PMCID:
    PMC9007917
    ArticlePDF–2.2M
    8.
    A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
    Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
    J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
    PMCID:
    PMC7325435
    Article
    9.
    Systematic Analysis of Complex Genetic Interactions
    Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
    Science. Author manuscript; available in PMC 2018 Nov 4.
    Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
    PMCID:
    PMC6215713
    ArticlePDF–1.9M
    10.
    Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response
    Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch
    PLoS Comput Biol. 2018 May; 13(5): e1006088. Published online 2018 May 8. doi: 10.1371/journal.pcbi.1006088
    PMCID:
    PMC5940180
    ArticlePDF–3.0M
    11.
    Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
    Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
    G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
    PMCID:
    PMC5765359
    ArticlePDF–2.2M
    12.
    A global interaction network maps a wiring diagram of cellular function
    Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
    Science. Author manuscript; available in PMC 2017 Oct 30.
    Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
    PMCID:
    PMC5661885
    ArticlePDF–2.6M
    13.
    Architecture and dynamics of overlapped RNA regulatory networks
    Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
    RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
    PMCID:
    PMC5648032
    ArticlePDF–6.6M
    14.
    The Genetic Landscape of a Cell
    Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
    Science. Author manuscript; available in PMC 2017 Sep 15.
    Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
    PMCID:
    PMC5600254
    ArticlePDF–2.4M
    15.
    An inter‐species protein–protein interaction network across vast evolutionary distance
    Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
    Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
    PMCID:
    PMC4848758
    ArticlePDF–2.1M
    16.
    Target selection by natural and redesigned PUF proteins
    Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
    Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
    PMCID:
    PMC4703012
    ArticlePDF–1.3M
    17.
    Plant-derived antifungal agent poacic acid targets β-1,3-glucan
    Jeff S. Piotrowski, Hiroki Okada, Fachuang Lu, Sheena C. Li, Li Hinchman, Ashish Ranjan, Damon L. Smith, Alan J. Higbee, Arne Ulbrich, Joshua J. Coon, Raamesh Deshpande, Yury V. Bukhman, Sean McIlwain, Irene M. Ong, Chad L. Myers, Charles Boone, Robert Landick, John Ralph, Mehdi Kabbage, Yoshikazu Ohya
    Proc Natl Acad Sci U S A. 2015 Mar 24; 112(12): E1490–E1497. Published online 2015 Mar 9. doi: 10.1073/pnas.1410400112
    PMCID:
    PMC4378397
    ArticlePDF–1.6M
    18.
    Comparison of S. cerevisiae F-BAR domain structures reveals a conserved inositol phosphate binding site
    Katarina Moravcevic, Diego Alvarado, Karl R. Schmitz, Jon A. Kenniston, Jeannine M. Mendrola, Kathryn M. Ferguson, Mark A. Lemmon
    Structure. Author manuscript; available in PMC 2016 Feb 3.
    Published in final edited form as: Structure. 2015 Feb 3; 23(2): 352–363. Published online 2015 Jan 22. doi: 10.1016/j.str.2014.12.009
    PMCID:
    PMC4319572
    ArticlePDF–2.6M
    19.
    A Global Protein Kinase and Phosphatase Interaction Network in Yeast
    Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
    Science. Author manuscript; available in PMC 2014 Apr 11.
    Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
    PMCID:
    PMC3983991
    ArticlePDF–1.4M
    20.
    A Visual Screen of Protein Localization during Sporulation Identifies New Components of Prospore Membrane-Associated Complexes in Budding Yeast
    Chien Lam, Ethan Santore, Elizabeth Lavoie, Leor Needleman, Nicholas Fiacco, Carey Kim, Aaron M. Neiman
    Eukaryot Cell. 2014 Mar; 13(3): 383–391. doi: 10.1128/EC.00333-13
    PMCID:
    PMC3957589
    ArticlePDF–1.3M

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