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Items: 1 to 20 of 27

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A Protein–Protein Interaction Analysis Suggests a Wide Range of New Functions for the p21-Activated Kinase (PAK) Ste20
Ifeoluwapo Matthew Joshua, Meng Lin, Ariestia Mardjuki, Alessandra Mazzola, Thomas Höfken
Int J Mol Sci. 2023 Nov; 24(21): 15916. Published online 2023 Nov 2. doi: 10.3390/ijms242115916
PMCID:
PMC10647699
AbstractArticlePDF–5.4M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
TORC1 Signaling Controls the Stability and Function of α-Arrestins Aly1 and Aly2
Ray W. Bowman, II, Eric M. Jordahl, Sydnie Davis, Stefanie Hedayati, Hannah Barsouk, Nejla Ozbaki-Yagan, Annette Chiang, Yang Li, Allyson F. O’Donnell
Biomolecules. 2022 Apr; 12(4): 533. Published online 2022 Mar 31. doi: 10.3390/biom12040533
PMCID:
PMC9031309
AbstractArticlePDF–12M
6.
Exofacial membrane composition and lipid metabolism regulates plasma membrane P4-ATPase substrate specificity
Bhawik Kumar Jain, Bartholomew P. Roland, Todd R. Graham
J Biol Chem. 2020 Dec 25; 295(52): 17997–18009. Published online 2021 Jan 13. doi: 10.1074/jbc.RA120.014794
PMCID:
PMC7939387
AbstractArticlePDF–2.3M
7.
An optogenetic system to control membrane phospholipid asymmetry through flippase activation in budding yeast
Tomomi Suzuki, Tetsuo Mioka, Kazuma Tanaka, Akira Nagatani
Sci Rep. 2020; 10: 12474. Published online 2020 Jul 27. doi: 10.1038/s41598-020-69459-0
PMCID:
PMC7385178
AbstractArticlePDF–8.2M
8.
Pho85 and PI(4,5)P2 regulate different lipid metabolic pathways in response to cold
Jose A. Prieto, Francisco Estruch, Isaac Córcoles-Sáez, Maurizio Del Poeta, Robert Rieger, Irene Stenzel, Francisca Randez-Gil
Biochim Biophys Acta Mol Cell Biol Lipids. Author manuscript; available in PMC 2020 May 28.
Published in final edited form as: Biochim Biophys Acta Mol Cell Biol Lipids. 2020 Feb; 1865(2): 158557. Published online 2019 Oct 31. doi: 10.1016/j.bbalip.2019.158557
PMCID:
PMC7254492
AbstractArticlePDF–2.0M
9.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
10.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
11.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
12.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
13.
Target of Rapamycin Complex 2 Regulates Actin Polarization and Endocytosis via Multiple Pathways
Delphine Rispal, Sandra Eltschinger, Michael Stahl, Stefania Vaga, Bernd Bodenmiller, Yann Abraham, Ireos Filipuzzi, N. Rao Movva, Ruedi Aebersold, Stephen B. Helliwell, Robbie Loewith
J Biol Chem. 2015 Jun 12; 290(24): 14963–14978. Published online 2015 Apr 16. doi: 10.1074/jbc.M114.627794
PMCID:
PMC4463442
AbstractArticlePDF–1.6M
14.
Control of Plasma Membrane Permeability by ABC Transporters
Svetlana Khakhina, Soraya S. Johnson, Raman Manoharlal, Sarah B. Russo, Corinne Blugeon, Sophie Lemoine, Anna B. Sunshine, Maitreya J. Dunham, L. Ashley Cowart, Frédéric Devaux, W. Scott Moye-Rowley
Eukaryot Cell. 2015 May; 14(5): 442–453. Prepublished online 2014 Feb 27. Published online 2015 May 5. doi: 10.1128/EC.00021-15
PMCID:
PMC4421010
AbstractArticlePDF–1.4M
15.
Protein kinase Gin4 negatively regulates flippase function and controls plasma membrane asymmetry
Françoise M. Roelants, Brooke M. Su, Joachim von Wulffen, Subramaniam Ramachandran, Elodie Sartorel, Amy E. Trott, Jeremy Thorner
J Cell Biol. 2015 Feb 2; 208(3): 299–311. doi: 10.1083/jcb.201410076
PMCID:
PMC4315245
AbstractArticlePDF–2.4M
16.
Plasma membrane aminoglycerolipid flippase function is required for signaling competence in the yeast mating pheromone response pathway
Elodie Sartorel, Evelyne Barrey, Rebecca K. Lau, Jeremy Thorner
Mol Biol Cell. 2015 Jan 1; 26(1): 134–150. doi: 10.1091/mbc.E14-07-1193
PMCID:
PMC4279224
AbstractArticlePDF–2.7M
17.
Fpk1/2 kinases regulate cellular sphingoid long-chain base abundance and alter cellular resistance to LCB elevation or depletion
Yukari Yamane-Sando, Etsuko Shimobayashi, Mitsugu Shimobayashi, Yasunori Kozutsumi, Shogo Oka, Hiromu Takematsu
Microbiologyopen. 2014 Apr; 3(2): 196–212. Published online 2014 Feb 10. doi: 10.1002/mbo3.160
PMCID:
PMC3996568
AbstractArticlePDF–1.5M
18.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
19.
Mutations in N-terminal Flanking Region of Blue Light-sensing Light-Oxygen and Voltage 2 (LOV2) Domain Disrupt Its Repressive Activity on Kinase Domain in the Chlamydomonas Phototropin
Yusuke Aihara, Takaharu Yamamoto, Koji Okajima, Kazuhiko Yamamoto, Tomomi Suzuki, Satoru Tokutomi, Kazuma Tanaka, Akira Nagatani
J Biol Chem. 2012 Mar 23; 287(13): 9901–9909. Published online 2012 Jan 30. doi: 10.1074/jbc.M111.324723
PMCID:
PMC3322977
AbstractArticlePDF–3.8M
20.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K

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