U.S. flag

An official website of the United States government

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Links from GEO Profiles

Items: 1 to 20 of 47

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
4.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Experimental exchange of paralogous domains in the MLH family provides evidence of sub-functionalization after gene duplication
Christopher M Furman, Ryan Elbashir, Gianno Pannafino, Nathan L Clark, Eric Alani
G3 (Bethesda) 2021 Jun; 11(6): jkab111. Published online 2021 Apr 19. doi: 10.1093/g3journal/jkab111
PMCID:
PMC8495741
AbstractArticlePDF–1.4M
7.
Molecular basis of the dual role of the Mlh1-Mlh3 endonuclease in MMR and in meiotic crossover formation
Jingqi Dai, Aurore Sanchez, Céline Adam, Lepakshi Ranjha, Giordano Reginato, Pierre Chervy, Carine Tellier-Lebegue, Jessica Andreani, Raphaël Guérois, Virginie Ropars, Marie-Hélène Le Du, Laurent Maloisel, Emmanuelle Martini, Pierre Legrand, Aurélien Thureau, Petr Cejka, Valérie Borde, Jean-Baptiste Charbonnier
Proc Natl Acad Sci U S A. 2021 Jun 8; 118(23): e2022704118. Published online 2021 Jun 4. doi: 10.1073/pnas.2022704118
PMCID:
PMC8201911
AbstractArticlePDF–2.2M
8.
Exo1 recruits Cdc5 polo kinase to MutLγ to ensure efficient meiotic crossover formation
Aurore Sanchez, Céline Adam, Felix Rauh, Yann Duroc, Lepakshi Ranjha, Bérangère Lombard, Xiaojing Mu, Mélody Wintrebert, Damarys Loew, Alba Guarné, Stefano Gnan, Chun-Long Chen, Scott Keeney, Petr Cejka, Raphaël Guérois, Franz Klein, Jean-Baptiste Charbonnier, Valérie Borde
Proc Natl Acad Sci U S A. 2020 Dec 1; 117(48): 30577–30588. Published online 2020 Nov 16. doi: 10.1073/pnas.2013012117
PMCID:
PMC7720183
AbstractArticlePDF–2.3M
9.
NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets
Lijuan Zhu, Ju Zhang, Yi Zhang, Jidong Lang, Ju Xiang, Xiaogang Bai, Na Yan, Geng Tian, Huajun Zhang, Jialiang Yang
Front Bioeng Biotechnol. 2020; 8: 547. Published online 2020 Jun 19. doi: 10.3389/fbioe.2020.00547
PMCID:
PMC7318716
AbstractArticlePDF–2.4M
10.
Inactivation of folylpolyglutamate synthetase Met7 results in genome instability driven by an increased dUTP/dTTP ratio
Tobias T Schmidt, Sushma Sharma, Gloria X Reyes, Anna Kolodziejczak, Tina Wagner, Brian Luke, Anders Hofer, Andrei Chabes, Hans Hombauer
Nucleic Acids Res. 2020 Jan 10; 48(1): 264–277. Published online 2019 Oct 24. doi: 10.1093/nar/gkz1006
PMCID:
PMC7145683
AbstractArticlePDF–3.9M
11.
Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis
Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos
Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022
PMCID:
PMC6715774
AbstractArticle
12.
Noncanonical Contributions of MutLγ to VDE-Initiated Crossovers During Saccharomyces cerevisiae Meiosis
Anura Shodhan, Darpan Medhi, Michael Lichten
G3 (Bethesda) 2019 May; 9(5): 1647–1654. Published online 2019 Mar 21. doi: 10.1534/g3.119.400150
PMCID:
PMC6505156
AbstractArticlePDF–1.3M
13.
Regulated crossing-over requires inactivation of Yen1/GEN1 resolvase during meiotic prophase I
Meret Arter, Vanesa Hurtado-Nieves, Ashwini Oke, Tangna Zhuge, Rahel Wettstein, Jennifer C. Fung, Miguel G. Blanco, Joao Matos
Dev Cell. Author manuscript; available in PMC 2019 Jun 18.
Published in final edited form as: Dev Cell. 2018 Jun 18; 45(6): 785–800.e6. doi: 10.1016/j.devcel.2018.05.020
PMCID:
PMC6043783
AbstractArticlePDF–2.6M
14.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
15.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
16.
Cytosine deamination and base excision repair cause R-loop–induced CAG repeat fragility and instability in Saccharomyces cerevisiae
Xiaofeng A. Su, Catherine H. Freudenreich
Proc Natl Acad Sci U S A. 2017 Oct 3; 114(40): E8392–E8401. Published online 2017 Sep 18. doi: 10.1073/pnas.1711283114
PMCID:
PMC5635916
AbstractArticlePDF–1.1M
17.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
18.
mlh3 mutations in baker’s yeast alter meiotic recombination outcomes by increasing noncrossover events genome-wide
Najla Al-Sweel, Vandana Raghavan, Abhishek Dutta, V. P. Ajith, Luigi Di Vietro, Nabila Khondakar, Carol M. Manhart, Jennifer A. Surtees, K. T. Nishant, Eric Alani
PLoS Genet. 2017 Aug; 13(8): e1006974. Published online 2017 Aug 21. doi: 10.1371/journal.pgen.1006974
Correction in:
PLoS Genet. 2017 Oct; 13(10): e1007067.
PMCID:
PMC5578695
AbstractArticlePDF–6.4M
19.
Distinct DNA-binding surfaces in the ATPase and linker domains of MutLγ determine its substrate specificities and exert separable functions in meiotic recombination and mismatch repair
Corentin Claeys Bouuaert, Scott Keeney
PLoS Genet. 2017 May; 13(5): e1006722. Published online 2017 May 15. doi: 10.1371/journal.pgen.1006722
PMCID:
PMC5448812
AbstractArticlePDF–27M
20.
Modulating Crossover Frequency and Interference for Obligate Crossovers in Saccharomyces cerevisiae Meiosis
Parijat Chakraborty, Ajith V. Pankajam, Gen Lin, Abhishek Dutta, G. Nandanan Krishnaprasad, Manu M. Tekkedil, Akira Shinohara, Lars M. Steinmetz, K. Thazath Nishant
G3 (Bethesda) 2017 May; 7(5): 1511–1524. Published online 2017 Mar 17. doi: 10.1534/g3.117.040071
PMCID:
PMC5427503
AbstractArticlePDF–2.0M

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Filter your results:

Find related data

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > Literature > PubMed Central (PMC)
Support Center