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Items: 1 to 20 of 70

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking
Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan
J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047
PMCID:
PMC10798858
AbstractArticlePDF–6.4M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
Regulation of yeast Snf1 (AMPK) by a polyhistidine containing pH sensing module
Kobi J. Simpson-Lavy, Martin Kupiec
iScience. 2022 Oct 21; 25(10): 105083. Published online 2022 Sep 6. doi: 10.1016/j.isci.2022.105083
PMCID:
PMC9486060
AbstractArticlePDF–3.4M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
Drug resistance in diploid yeast is acquired through dominant alleles, haploinsufficiency, gene duplication and aneuploidy
Jordan B. Barney, Dakshayini G. Chandrashekarappa, Samantha R. Soncini, Martin C. Schmidt
PLoS Genet. 2021 Sep; 17(9): e1009800. Published online 2021 Sep 23. doi: 10.1371/journal.pgen.1009800
PMCID:
PMC8460028
AbstractArticlePDF–4.7M
8.
Enhanced multi-stress tolerance and glucose utilization of Saccharomyces cerevisiae by overexpression of the SNF1 gene and varied beta isoform of Snf1 dominates in stresses
Lu Meng, Hui-Ling Liu, Xue Lin, Xiao-Ping Hu, Kun-Ru Teng, Si-Xin Liu
Microb Cell Fact. 2020; 19: 134. Published online 2020 Jun 22. doi: 10.1186/s12934-020-01391-4
PMCID:
PMC7310068
AbstractArticlePDF–2.0M
9.
Heme, A Metabolic Sensor, Directly Regulates the Activity of the KDM4 Histone Demethylase Family and Their Interactions with Partner Proteins
Purna Chaitanya Konduri, Tianyuan Wang, Narges Salamat, Li Zhang
Cells. 2020 Mar; 9(3): 773. Published online 2020 Mar 22. doi: 10.3390/cells9030773
PMCID:
PMC7140707
AbstractArticlePDF–3.2M
10.
Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis
Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos
Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022
PMCID:
PMC6715774
AbstractArticle
11.
Snf1 cooperates with the CWI MAPK pathway to mediate the degradation of Med13 following oxidative stress
Stephen D. Willis, David C. Stieg, Kai Li Ong, Ravina Shah, Alexandra K. Strich, Julianne H. Grose, Katrina F. Cooper
Microb Cell. 2018 Aug 6; 5(8): 357–370. Published online 2018 Jun 25. doi: 10.15698/mic2018.08.641
PMCID:
PMC6116281
AbstractArticlePDF–2.9M
12.
Laboratory evolution for forced glucose-xylose co-consumption enables identification of mutations that improve mixed-sugar fermentation by xylose-fermenting Saccharomyces cerevisiae
Ioannis Papapetridis, Maarten D Verhoeven, Sanne J Wiersma, Maaike Goudriaan, Antonius J A van Maris, Jack T Pronk
FEMS Yeast Res. 2018 Sep; 18(6): foy056. Published online 2018 May 15. doi: 10.1093/femsyr/foy056
PMCID:
PMC6001886
AbstractArticlePDF–2.3M
13.
Mitochondrial Voltage-Dependent Anion Channel Protein Por1 Positively Regulates the Nuclear Localization of Saccharomyces cerevisiae AMP-Activated Protein Kinase
Aishwarya Shevade, Vera Strogolova, Marianna Orlova, Chay Teng Yeo, Sergei Kuchin
mSphere. 2018 Jan-Feb; 3(1): e00482-17. Published online 2018 Jan 10. doi: 10.1128/mSphere.00482-17
PMCID:
PMC5760747
AbstractArticlePDF–2.5M
14.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
15.
The glucose sensor Snf1 and the transcription factors Msn2 and Msn4 regulate transcription of the vacuolar iron importer gene CCC1 and iron resistance in yeast
Liangtao Li, Jerry Kaplan, Diane M. Ward
J Biol Chem. 2017 Sep 15; 292(37): 15577–15586. Published online 2017 Jul 31. doi: 10.1074/jbc.M117.802504
PMCID:
PMC5602413
AbstractArticlePDF–3.3M
16.
Expression control of the AMPK regulatory subunit and its functional significance in yeast ER stress response
Yuichi Kimura, Kenji Irie, Tomoaki Mizuno
Sci Rep. 2017; 7: 46713. Published online 2017 Apr 21. doi: 10.1038/srep46713
PMCID:
PMC5399461
AbstractArticlePDF–1.3M
17.
Discovery of Enzymatic Targets of Transcriptional Activators via in Vivo Covalent Chemical Capture
Amanda Dugan, Chinmay Y. Majmudar, Rachel Pricer, Sherry Niessen, Jody K. Lancia, Hugo Yik-Hong Fung, Benjamin F. Cravatt, Anna K. Mapp
J Am Chem Soc. Author manuscript; available in PMC 2017 Mar 28.
Published in final edited form as: J Am Chem Soc. 2016 Sep 28; 138(38): 12629–12635. Published online 2016 Sep 20. doi: 10.1021/jacs.6b07680
PMCID:
PMC5217703
AbstractArticlePDF–597K
18.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
19.
The β subunit of yeast AMP-activated protein kinase directs substrate specificity in response to alkaline stress
Dakshayini G. Chandrashekarappa, Rhonda R. McCartney, Allyson F. O’Donnell, Martin C. Schmidt
Cell Signal. Author manuscript; available in PMC 2017 Dec 1.
Published in final edited form as: Cell Signal. 2016 Dec; 28(12): 1881–1893. Published online 2016 Aug 31. doi: 10.1016/j.cellsig.2016.08.016
PMCID:
PMC5067241
AbstractArticlePDF–2.8M
20.
Systematic identification of genes involved in metabolic acid stress resistance in yeast and their potential as cancer targets
John J. Shin, Qurratulain Aftab, Pamela Austin, Jennifer A. McQueen, Tak Poon, Shu Chen Li, Barry P. Young, Calvin D. Roskelley, Christopher J. R. Loewen
Dis Model Mech. 2016 Sep 1; 9(9): 1039–1049. doi: 10.1242/dmm.023374
PMCID:
PMC5047693
AbstractArticle

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