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Items: 20

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
3.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
The Hsp90 isoforms from S. cerevisiae differ in structure, function and client range
Hannah Girstmair, Franziska Tippel, Abraham Lopez, Katarzyna Tych, Frank Stein, Per Haberkant, Philipp Werner Norbert Schmid, Dominic Helm, Matthias Rief, Michael Sattler, Johannes Buchner
Nat Commun. 2019; 10: 3626. Published online 2019 Aug 9. doi: 10.1038/s41467-019-11518-w
PMCID:
PMC6689086
AbstractArticlePDF–2.3M
6.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
7.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
8.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
9.
Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28
Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink
G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317
Correction in:
G3 (Bethesda). 2019 Aug; 9(8): 2787.
PMCID:
PMC5473755
AbstractArticlePDF–2.7M
10.
Quantitative Analysis of Dynamic Protein Interactions during Transcription Reveals a Role for Casein Kinase II in Polymerase-associated Factor (PAF) Complex Phosphorylation and Regulation of Histone H2B Monoubiquitylation
Lynn Glowczewski Bedard, Raghuvar Dronamraju, Jenny L. Kerschner, Gerald O. Hunter, Elizabeth DeVlieger Axley, Asha K. Boyd, Brian D. Strahl, Amber L. Mosley
J Biol Chem. 2016 Jun 24; 291(26): 13410–13420. Published online 2016 May 3. doi: 10.1074/jbc.M116.727735
PMCID:
PMC4919428
AbstractArticlePDF–820K
11.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
12.
The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation
Lydia M. Castelli, David Talavera, Christopher J. Kershaw, Sarah S. Mohammad-Qureshi, Joseph L. Costello, William Rowe, Paul F. G. Sims, Christopher M. Grant, Simon J. Hubbard, Mark P. Ashe, Graham D. Pavitt
PLoS Genet. 2015 May; 11(5): e1005233. Published online 2015 May 14. doi: 10.1371/journal.pgen.1005233
PMCID:
PMC4431810
AbstractArticlePDF–5.5M
13.
A role for eisosomes in maintenance of plasma membrane phosphoinositide levels
Florian Fröhlich, Romain Christiano, Daniel K. Olson, Abel Alcazar-Roman, Pietro DeCamilli, Tobias C. Walther
Mol Biol Cell. 2014 Sep 15; 25(18): 2797–2806. doi: 10.1091/mbc.E13-11-0639
PMCID:
PMC4161514
AbstractArticlePDF–5.8M
14.
The nuclear basket proteins Mlp1p and Mlp2p are part of a dynamic interactome including Esc1p and the proteasome
Mario Niepel, Kelly R. Molloy, Rosemary Williams, Julia C. Farr, Anne C. Meinema, Nicholas Vecchietti, Ileana M. Cristea, Brian T. Chait, Michael P. Rout, Caterina Strambio-De-Castillia
Mol Biol Cell. 2013 Dec 15; 24(24): 3920–3938. doi: 10.1091/mbc.E13-07-0412
PMCID:
PMC3861087
AbstractArticlePDF–7.3M
15.
Coiled-coil networking shapes cell molecular machinery
Yongqiang Wang, Xinlei Zhang, Hong Zhang, Yi Lu, Haolong Huang, Xiaoxi Dong, Jinan Chen, Jiuhong Dong, Xiao Yang, Haiying Hang, Taijiao Jiang
Mol Biol Cell. 2012 Oct 1; 23(19): 3911–3922. doi: 10.1091/mbc.E12-05-0396
PMCID:
PMC3459866
AbstractArticlePDF–7.0M
16.
Seg1 controls eisosome assembly and shape
Karen E. Moreira, Sebastian Schuck, Bianca Schrul, Florian Fröhlich, James B. Moseley, Tobias C. Walther, Peter Walter
J Cell Biol. 2012 Aug 6; 198(3): 405–420. doi: 10.1083/jcb.201202097
PMCID:
PMC3413353
AbstractArticlePDF–5.2M
17.
Global Functional Map of the p23 Molecular Chaperone Reveals an Extensive Cellular Network
Frank J. Echtenkamp, Elena Zelin, Ellinor Oxelmark, Joyce I. Woo, Brenda J. Andrews, Michael Garabedian, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2012 Jul 22.
Published in final edited form as: Mol Cell. 2011 Jul 22; 43(2): 229–241. doi: 10.1016/j.molcel.2011.05.029
PMCID:
PMC3155841
AbstractArticlePDF–1.7M
18.
Reconstitution and Protein Composition Analysis of Endocytic Actin Patches
Alphée Michelot, Michael Costanzo, Ali Sarkeshik, Charles Boone, John R. Yates, III, David G. Drubin
Curr Biol. Author manuscript; available in PMC 2011 Nov 9.
Published in final edited form as: Curr Biol. 2010 Nov 9; 20(21): 1890–1899. Published online 2010 Oct 28. doi: 10.1016/j.cub.2010.10.016
PMCID:
PMC2998891
AbstractArticlePDF–2.6M
19.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
20.
Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins
Raffi Tonikian, Xiaofeng Xin, Christopher P. Toret, David Gfeller, Christiane Landgraf, Simona Panni, Serena Paoluzi, Luisa Castagnoli, Bridget Currell, Somasekar Seshagiri, Haiyuan Yu, Barbara Winsor, Marc Vidal, Mark B. Gerstein, Gary D. Bader, Rudolf Volkmer, Gianni Cesareni, David G. Drubin, Philip M. Kim, Sachdev S. Sidhu, Charles Boone
PLoS Biol. 2009 Oct; 7(10): e1000218. Published online 2009 Oct 20. doi: 10.1371/journal.pbio.1000218
PMCID:
PMC2756588
AbstractArticlePDF–838K

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