PMC Links for GEO Profiles (Select 17160837) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 90009564.

The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast

Houqing Yu, Roarke A Kamber, Vladimir Denic

eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531

PMCID:: PMC9000956

Abstract Article PDF–1.0M

Select item 77586255.

A piggybacking mechanism enables peroxisomal localization of the glyoxylate cycle enzyme Mdh2 in yeast

Shiran Gabay-Maskit, Luis Daniel Cruz-Zaragoza, Nadav Shai, Miriam Eisenstein, Chen Bibi, Nir Cohen, Tobias Hansen, Eden Yifrach, Nofar Harpaz, Ruth Belostotsky, Wolfgang Schliebs, Maya Schuldiner, Ralf Erdmann, Einat Zalckvar

J Cell Sci. 2020 Dec 15; 133(24): jcs244376. Published online 2020 Dec 17. doi: 10.1242/jcs.244376

PMCID:: PMC7758625

Abstract Article

Select item 77053076.

Pex3 confines pexophagy receptor activity of Atg36 to peroxisomes by regulating Hrr25-mediated phosphorylation and proteasomal degradation

Sota Meguro, Xizhen Zhuang, Hiromi Kirisako, Hitoshi Nakatogawa

J Biol Chem. 2020 Nov 27; 295(48): 16292–16298. Published online 2020 Sep 21. doi: 10.1074/jbc.RA120.013565

PMCID:: PMC7705307

Abstract Article PDF–1.4M

Select item 76597237.

The Pex3–Inp1 complex tethers yeast peroxisomes to the plasma membrane

Georgia E. Hulmes, John D. Hutchinson, Noa Dahan, James M. Nuttall, Ellen G. Allwood, Kathryn R. Ayscough, Ewald H. Hettema

J Cell Biol. 2020 Oct 5; 219(10): e201906021. Published online 2020 Sep 24. doi: 10.1083/jcb.201906021

PMCID:: PMC7659723

Abstract Article PDF–4.5M

Select item 76597218.

Peroxisome retention involves Inp1-dependent peroxisome–plasma membrane contact sites in yeast

Arjen M. Krikken, Huala Wu, Rinse de Boer, Damien P. Devos, Tim P. Levine, Ida J. van der Klei

J Cell Biol. 2020 Oct 5; 219(10): e201906023. Published online 2020 Aug 17. doi: 10.1083/jcb.201906023

PMCID:: PMC7659721

Abstract Article PDF–5.0M

Select item 76114409.

Saccharomyces cerevisiae cells lacking Pex3 contain membrane vesicles that harbor a subset of peroxisomal membrane proteins

Justyna P. Wroblewska, Luis Daniel Cruz-Zaragoza, Yuan Wei, Andreas Schummer, Silvia G. Chuartzman, Rinse de Boer, Silke Oeljeklaus, Maya Schuldiner, Einat Zalckvar, Bettina Warscheid, Ralf Erdmann, Ida J. van der Klei

Biochim Biophys Acta Mol Cell Res. Author manuscript; available in PMC 2021 Jul 31.

Published in final edited form as: Biochim Biophys Acta Mol Cell Res. 2017 Oct 1; 1864(10): 1656–1667. Published online 2017 May 26. doi: 10.1016/j.bbamcr.2017.05.021

PMCID:: PMC7611440

Abstract Article PDF–2.3M

Select item 761136810.

Pex35 is a regulator of peroxisome abundance

Ido Yofe, Kareem Soliman, Silvia G. Chuartzman, Bruce Morgan, Uri Weill, Eden Yifrach, Tobias P. Dick, Sara J. Cooper, Christer S. Ejsing, Maya Schuldiner, Einat Zalckvar, Sven Thoms

J Cell Sci. Author manuscript; available in PMC 2021 Jul 24.

Published in final edited form as: J Cell Sci. 2017 Feb 15; 130(4): 791–804. Published online 2017 Jan 3. doi: 10.1242/jcs.187914

PMCID:: PMC7611368

Abstract Article PDF–2.3M

Select item 634717011.

Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation

Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch

PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180

PMCID:: PMC6347170

Abstract Article PDF–16M

Select item 607699912.

Genome-wide SWAp-tag yeast libraries for proteome exploration

Uri Weill, Ido Yofe, Ehud Sass, Bram Stynen, Dan Davidi, Janani Natarajan, Reut Ben Menachem, Zohar Avihou, Omer Goldman, Nofar Harpaz, Silvia Chuartzman, Kiril Kniazev, Barbara Knoblach, Janina Laborenz, Felix Boos, Jacqueline Kowarzyk, Shifra Ben-Dor, Einat Zalckvar, Johannes M. Herrmann, Richard A. Rachubinski, Ophry Pines, Doron Rapaport, Stephen W. Michnick, Emmanuel D. Levy, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2019 Jan 9.

Published in final edited form as: Nat Methods. 2018 Aug; 15(8): 617–622. Published online 2018 Jul 9. doi: 10.1038/s41592-018-0044-9

Correction in:: Nat Methods. 2019 Jan 2

PMCID:: PMC6076999

Abstract Article PDF–1.7M

Select item 606392613.

Lipid droplet and peroxisome biogenesis occur at the same ER subdomains

Amit S. Joshi, Benjamin Nebenfuehr, Vineet Choudhary, Prasanna Satpute-Krishnan, Tim P. Levine, Andy Golden, William A. Prinz

Nat Commun. 2018; 9: 2940. Published online 2018 Jul 27. doi: 10.1038/s41467-018-05277-3

PMCID:: PMC6063926

Abstract Article PDF–4.3M

Select item 576535914.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 575387315.

Protein Moonlighting Revealed by Noncatalytic Phenotypes of Yeast Enzymes

Adriana Espinosa-Cantú, Diana Ascencio, Selene Herrera-Basurto, Jiewei Xu, Assen Roguev, Nevan J. Krogan, Alexander DeLuna

Genetics. 2018 Jan; 208(1): 419–431. Published online 2017 Nov 10. doi: 10.1534/genetics.117.300377

PMCID:: PMC5753873

Abstract Article PDF–1.5M

Select item 566188516.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 563334417.

The AAA protein Msp1 mediates clearance of excess tail-anchored proteins from the peroxisomal membrane

Nicholas R Weir, Roarke A Kamber, James S Martenson, Vladimir Denic

eLife. 2017; 6: e28507. Published online 2017 Sep 14. doi: 10.7554/eLife.28507

PMCID:: PMC5633344

Abstract Article PDF–5.1M

Select item 560565418.

Two NAD-linked redox shuttles maintain the peroxisomal redox balance in Saccharomyces cerevisiae

Nadal A. Al-Saryi, Murtakab Y Al-Hejjaj, Carlo W. T. van Roermund, Georgia E. Hulmes, Lakhan Ekal, Chantell Payton, Ronald J. A. Wanders, Ewald H. Hettema

Sci Rep. 2017; 7: 11868. Published online 2017 Sep 19. doi: 10.1038/s41598-017-11942-2

PMCID:: PMC5605654

Abstract Article PDF–2.9M

Select item 560025419.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 559294520.

A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis

Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark

G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089

PMCID:: PMC5592945

Abstract Article PDF–1.7M

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