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Items: 1 to 20 of 153

1.
An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae
Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori
Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749
PMCID:
PMC11423678
AbstractArticlePDF–1.7M
2.
Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast
Johanna Kociemba, Andreas Christ Sølvsten Jørgensen, Nika Tadić, Anthony Harris, Theodora Sideri, Wei Yee Chan, Fairouz Ibrahim, Elçin Ünal, Mark Skehel, Vahid Shahrezaei, Orlando Argüello-Miranda, Folkert Jacobus van Werven
EMBO J. 2024 Aug; 43(15): 3256–3286. Published online 2024 Jun 17. doi: 10.1038/s44318-024-00149-7
PMCID:
PMC11294583
AbstractArticlePDF–5.1M
3.
The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis
Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger
Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7
PMCID:
PMC11024185
AbstractArticlePDF–7.4M
4.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
5.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
6.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
7.
Systematic analysis of tup1 and cyc8 mutants reveals distinct roles for TUP1 and CYC8 and offers new insight into the regulation of gene transcription by the yeast Tup1-Cyc8 complex
Brenda Lee, Michael Church, Karsten Hokamp, Mohamed M. Alhussain, Atif A. Bamagoos, Alastair B. Fleming
PLoS Genet. 2023 Aug; 19(8): e1010876. Published online 2023 Aug 11. doi: 10.1371/journal.pgen.1010876
PMCID:
PMC10446238
AbstractArticlePDF–3.1M
8.
Functional characterization and comparative analysis of gene repression-mediating domains interacting with yeast pleiotropic corepressors Sin3, Cyc8 and Tup1
Julia Lettow, Felix Kliewe, Rasha Aref, Hans-Joachim Schüller
Curr Genet. 2023; 69(2-3): 127–139. Published online 2023 Mar 1. doi: 10.1007/s00294-023-01262-6
PMCID:
PMC10163088
AbstractArticlePDF–1.2M
9.
Tup1 is critical for transcriptional repression in Quiescence in S. cerevisiae
Thomas B. Bailey, Phaedra A. Whitty, Eric U. Selker, Jeffrey. N. McKnight, Laura E. McKnight
PLoS Genet. 2022 Dec; 18(12): e1010559. Published online 2022 Dec 21. doi: 10.1371/journal.pgen.1010559
PMCID:
PMC9815585
AbstractArticlePDF–2.5M
10.
A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker
Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0
PMCID:
PMC9673352
AbstractArticlePDF–2.6M
11.
Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress
Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup
Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536
PMCID:
PMC9638028
AbstractArticle
12.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
13.
Transcriptional repressor Gal80 recruits corepressor complex Cyc8–Tup1 to structural genes of the Saccharomyces cerevisiae GAL regulon
Julia Lettow, Rasha Aref, Hans-Joachim Schüller
Curr Genet. 2022; 68(1): 115–124. Published online 2021 Oct 7. doi: 10.1007/s00294-021-01215-x
PMCID:
PMC8801411
AbstractArticlePDF–1.2M
14.
Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor
Emily J Parnell, Timothy J Parnell, David J Stillman
Genetics. 2021 Oct; 219(2): iyab120. Published online 2021 Jul 28. doi: 10.1093/genetics/iyab120
PMCID:
PMC8633128
AbstractArticlePDF–2.0M
15.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
16.
Forkhead transcription factor Fkh1: insights into functional regulatory domains crucial for recruitment of Sin3 histone deacetylase complex
Rasha Aref, Marwa N. M. E. Sanad, Hans-Joachim Schüller
Curr Genet. 2021; 67(3): 487–499. Published online 2021 Feb 26. doi: 10.1007/s00294-021-01158-3
PMCID:
PMC8139909
AbstractArticlePDF–2.4M
17.
A high-resolution protein architecture of the budding yeast genome
Matthew J. Rossi, Prashant K. Kuntala, William K.M. Lai, Naomi Yamada, Nitika Badjatia, Chitvan Mittal, Guray Kuzu, Kylie Bocklund, Nina P. Farrell, Thomas R. Blanda, Joshua D. Mairose, Ann V. Basting, Katelyn S. Mistretta, David J. Rocco, Emily S. Perkinson, Gretta D. Kellogg, Shaun Mahony, B. Franklin Pugh
Nature. Author manuscript; available in PMC 2021 Sep 10.
Published in final edited form as: Nature. 2021 Apr; 592(7853): 309–314. Published online 2021 Mar 10. doi: 10.1038/s41586-021-03314-8
PMCID:
PMC8035251
AbstractArticlePDF–7.8M
18.
Ash1 and Tup1 dependent repression of the Saccharomyces cerevisiae HO promoter requires activator-dependent nucleosome eviction
Emily J. Parnell, Timothy J. Parnell, Chao Yan, Lu Bai, David J. Stillman
PLoS Genet. 2020 Dec; 16(12): e1009133. Published online 2020 Dec 31. doi: 10.1371/journal.pgen.1009133
PMCID:
PMC7806131
AbstractArticlePDF–4.3M
19.
Hsp104-dependent ability to assimilate mannitol and sorbitol conferred by a truncated Cyc8 with a C-terminal polyglutamine in Saccharomyces cerevisiae
Hideki Tanaka, Kousaku Murata, Wataru Hashimoto, Shigeyuki Kawai
PLoS One. 2020; 15(11): e0242054. Published online 2020 Nov 11. doi: 10.1371/journal.pone.0242054
PMCID:
PMC7657529
AbstractArticlePDF–1.3M
20.
Functional analysis of Cti6 core domain responsible for recruitment of epigenetic regulators Sin3, Cyc8 and Tup1
Rasha Aref, Hans-Joachim Schüller
Curr Genet. 2020; 66(6): 1191–1203. Published online 2020 Sep 26. doi: 10.1007/s00294-020-01109-4
PMCID:
PMC7599196
AbstractArticlePDF–1.4M

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